KEGG   Scomber japonicus (chub mackerel): 128374883
Entry
128374883         CDS       T09718                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    128374883 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sjo03021]
    128374883 (taf5l)
   03036 Chromosome and associated proteins [BR:sjo03036]
    128374883 (taf5l)
Transcription machinery [BR:sjo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     128374883 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     128374883 (taf5l)
Chromosome and associated proteins [BR:sjo03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     128374883 (taf5l)
    STAGA complex
     128374883 (taf5l)
    TFTC complex
     128374883 (taf5l)
    SAGA complex
     128374883 (taf5l)
    SLIK complex
     128374883 (taf5l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 TFIID_NTD2 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SCAP WD40_MABP1-WDR62_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_HPS5 RMC1_N Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_WDR19_1st WD40_like PEP5_VPS11_N PROPPIN Beta-prop_IP5PC_F Nbas_N Beta-prop_NWD2_C WD_LRWD1 Beta-prop_ELP1_1st Lysis_col
Other DBs
NCBI-GeneID: 128374883
NCBI-ProteinID: XP_053191094
LinkDB
Position
2:complement(5106552..5112286)
AA seq 600 aa
MKRVRTEQIQYAVAQYLKRRQYVDTEPSLKGAKLFQSAEEMAASLTVQTESGCANIVSAA
PCQSDPQQYETQYSRLRSFLSETEISWAKEVSSILYPLFVYLHLDMVRCGLKGAVDGFYS
RFHGAFLQDSEQRATVEQLRHVLTAQDVAGNPKLSAFLEHKYVVHLTEPAYSYLLRYLQS
EDNSALCRALSTHLQVEVTASRRTDYQLYGAAGGATAAPNSTSSWAGVDGAEGGEGVDVP
AGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFHHTEQLLNTAEVSADSRLLAAGFDS
STVKLWSLRARKLKAKPHQADVSHIHLACDVLEEEVDEEDVSGSEIKTLRGHSGPVFRTA
FLTDSSGLLSCSEDTTIRYWDLGSFTNTVLYQGHAYPVWDVDVSPCSLYFASGSHDRTAR
LWTFSCTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTIRLWSTQQGASVRLFTGHRG
PVLSLAFSPNGKYLASAGEDQRVKLWDLASGTLFKDLRGHTDSVTSLSFSPDSSLVASSS
MDNSVRVWDIRNSHGGTPADGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGTAQEKAEQ
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgaagcgggttcgcacggagcagatccagtatgctgtggctcagtacctgaagcggagg
cagtatgtggacactgaaccctccctgaaaggagccaaactcttccagtcagctgaggag
atggctgccagcctcacggtgcagacagagtcgggctgtgccaacatcgtctcggctgca
ccgtgccagtcggacccgcagcagtacgagacgcagtactccagactgcgctccttcctg
tcagaaacagagatatcgtgggcgaaggaggtgagcagcatcctctacccgctcttcgtc
tacctccacctggacatggtgcgctgcggcctgaagggggcagtagatggtttctacagt
cgtttccacggcgcctttcttcaggacagcgagcagcgcgccaccgtggagcagctccgg
cacgttctcaccgctcaggacgtagcgggcaaccccaagctgagcgctttcctggagcac
aagtacgtggtgcacctgacggagccggcctacagctacctgctgcgctacctgcagagc
gaggacaacagcgccctctgcagagcgctcagcacacacctgcaggtggaggtcaccgcc
tccaggcgtacagactaccagctgtacggagcagccggtggggcgaccgccgccccaaac
tccacctcctcctgggcgggagtggacggggcagagggaggagaaggggtggacgtccct
gcagggatcccacagagtgaggcggctctggaggctctgcaggactgcatcaagaaagtc
cgtgagggtcccccgtcgctcaccaccgtgtgtttctacgccttccaccacacggagcag
ctgttgaacaccgccgaggtctccgctgacagccggctgctggccgccggcttcgacagc
tccacagtaaaactgtggagcctccgagcccggaagctgaaggctaaaccgcaccaggcc
gacgtgtcacacatccacctggcgtgtgacgtactggaggaggaagtggacgaggaagac
gtctccggcagtgagataaagactctgcgaggtcacagcggtccggtgtttcgtaccgcc
ttcctgaccgacagctccggcctgctctcctgctccgaggacacgaccatccgttactgg
gacctgggcagcttcaccaacacggtgctctaccaggggcacgcctacccggtgtgggac
gtggacgtcagcccctgcagcctctatttcgccagcggctcccacgaccgcaccgcccgc
ctctggacgttctcctgcacctacccgctgaggctctacgccgggcatctcgccgacgtc
gactgcgtcaagttccaccccaactccaactacctggccaccggctccacagacaaaact
atccggctgtggagcacccagcagggggcgtcggttcgcctcttcacaggccaccgcggc
cccgtgctgtcgctcgctttctcacccaacggcaagtacttggcgtctgccggcgaggac
cagagagtgaagctgtgggacttggcctcggggacgttgttcaaagacctgcggggacac
acagacagcgtcaccagcctgtctttcagcccggacagcagcctggtggcgtcgtcgtct
atggacaactcggtcagggtgtgggacatcaggaactcccacggcgggacgccagctgac
ggctcgtccagcgagctggtcggactgtacacgggaaacaccagcaacgtgctgaatgtc
cagttcatggcctgcaacctgctgctggtgacgggaactgctcaagagaaagcagagcag
tag

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