Scomber japonicus (chub mackerel): 128374962
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Entry
128374962 CDS
T09718
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128374962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128374962
03021 Transcription machinery [BR:
sjo03021
]
128374962
03036 Chromosome and associated proteins [BR:
sjo03036
]
128374962
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Helix-turn-helix
ARID
128374962
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128374962
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128374962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
128374962
NCBI-ProteinID:
XP_053191155
LinkDB
All DBs
Position
16:complement(19676789..19854233)
Genome browser
AA seq
2196 aa
AA seq
DB search
MAAQVASAPTRTNNKNKKLSSGLGPELNSGKSGGGGGGGGGNAQRTGPMLGAGDGTLNNV
DHQRRNELNMVHSTSTTHGAPDGRDKDGNNLTSASASTNSTTSSMETGLIANHKLKCVGS
GDPPQSQPPQQQQQPPPQFGQFAPHQQRQIQSNNIANNNGQGPRGDRGMDHQHHGGKENL
LGSQGEPQQQHMPGKGEGELTCKPAERMMGTRYEHSNLGPTSNNSEFSNNYYTPRPCYEQ
HGGQQQQSSGMGITHSSAHNSMDNSHEAGYHNSQYNQYPAYRAGYGGGAYGMMGPSGCRQ
PGNMMMSSNSSANHGKSTLGAASGGFQRFPGQTQQQQQHPSGATPTLNQLLTSPSPMMRG
YGGAYQDYSGPSAQQQAGMGLGKDVGPQYGANSAHGWGGQQRNHPHSMSPGNGGQGLGRT
QVSSMDFMAMKRSQLYGMANNPYSAPQQPGAGPYPPNQPYSSPPPHRYPMSMQGRGQMGM
GGMQYPQQQQVAPYGQQGMGGYSQQQQQQQQPGQQGTPPYFSPPQQTPPGPTQSPYLQPR
PPPQQEAQQESYSTRGPAPGNSGKTNNEDGVSQDRPSSLPDLSGSIDDLPTGTESGLGST
VSAGGSSSSSSSSQGEQGGASNQGQSPFSPHASPHLHSQRSGPSPSPVGSPAGSTQSQQS
RSGSGPISPASGPSANTTAPGSTMAPQSSGNGPDGSHPPITRSPMAQERGFMSNMQRNQT
GSQFASPQSGPPMSPHPSPGGPLYSGMGSYSQSGPTGPYGPQGSQYGHQGNYPRTSNYSG
AASTSYSGPGPGMTNSLGMNASSPMHGQGPGQPIPIGRSHGPANQNRVYPPMGPSSPSMP
QPAGPGMGPPSLGTSNRKAQEAAAATMPGSANSTHNRQGSYQGPGINQASSMATTVPYSQ
QAGNNGPAMGNAQGPAYNTLPSGAIGISGDGMMSPDGKLKTEAKDDSGPANEPHKPKLQD
SYSNNNSTSGSQQYVSQPATPGGALPVPSPLSPSPASLSSYHGDDSDSISSPPWPLKTPS
SPKANPNSSSLGGERITRLYELGVEPERRSWVERYLSFMEERGTPVAQLPIVGKKPLDLW
KLYMAVREIGGLAMVNKNKKWRELSTNLNVGTSSSSASSLKKQYIQYLFAYECKMERGEE
PPADSSSSSGSMAGGDNRKQVKIQPPSPANSGGSLQGPQTPQSSGSSSTAEAAGDLKPPT
PTTTPLGQVTPLPPNRSSVSVQDPFSEVSDPAFQKRATSLPPSAPYQQGLSMPDMMMRMQ
YDAKDPFAGMRKMAGADPYMPGQIPSGGMQDMYGRPPSALSMSQRSQYPYGPGFDRRHDG
YGQQYPGMPYGMHPSGMFPQQQGYKRPMDGIYGPPPKRHESDMYAMQYPNQQPDIYNHYG
GGYSGPEHRPIQGQFPYPYPRERMAPSGQSQHSMMGGGPTPNHAADGPNMWPSRTDLGYP
YPNRQGPPSQMAPYGSIGRDDMDGRPGQDQWHRQSPYMSSSGGMTPLSSRQPPSSYSNSP
SMANHLPRAPSPGAFQRSMDSRMSPSKIPFMSPMKMPKPGMAMMGSQGPGPLGQFPPNLR
KDLNYPPGSVEATIPILKPRRKLTSKDTGTPEAWRVMMSLKSGLLAESTWALDTINILLY
DDSTVASFNISQLPGFLELIVEYFRRCLIEMFGILEEYEVGTVAHKSLSTEEAPPVTKEP
VSSEVNGEREESEVNLKDDKNKEDREKGGDEEESEKGAESKKECVDQPVTALEPRPKQAS
KYDKLPIKIVHKEDVTEDMTGYVTEFTSGLLHWQAGGGDSTAHIQTHFEPRSEPPTKADE
KMRKENKQENKMDDVKKQPRKHITATIDDVLCARVDALSYAHPARSLPSYPFRVHSDGEQ
DHITLLEDEPRCLDEAPLSTTSAWQDSLTKRCLCVSNIIRSLSFLPGNDSDMSRHPALVL
LLGRLLLLHHQHPERNRSPPTYQRDEQQEQGLSSSKEEWWWECLSVLRENAMVTLANISG
QLDLSTYPDTICLPILDGLLHWMVCPSAEAQDPFPSAAPFSQLTPQRLVLECLCKLSIQD
GNVDLLLATPPFSRQEKLFTVLLRYVGQRKAQVYREMAVAVLSHLAQGDSTAARAIAMQK
GSVGNLVGFLEDGVSMSQYQQNPHSLLHMGHPPMDPPSINMMCRAAKGLLAMAKVEENKT
EFVLYESRLLDISISSVLNVGVVAIICQVLFHLGKL
NT seq
6591 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagtggcatcggctccgaccagaacgaataacaaaaataagaaattatcc
agcggtttgggtccggagctcaattcggggaaatccggaggaggaggcggaggaggagga
gggaacgcacagcggaccggaccgatgttgggtgccggagatgggactctgaataatgta
gaccatcaacgccgaaacgagctcaacatggtccattcaacttccacgacccacggcgct
ccggacggccgcgataaggatgggaataacctcacgtccgcctcggcgtcgactaattca
accacttcctcgatggaaacgggtctgatcgcgaaccacaagctgaaatgtgtggggagc
ggagatccccctcagtctcagccgccgcagcagcagcagcagccgccgccgcaatttgga
caatttgcgccacatcagcaacgacagatccaaagtaacaacatcgccaacaacaacggc
cagggaccccgtggggacagagggatggatcaccaacaccacggtggcaaagagaacctg
ttggggagccagggggagccacagcagcagcacatgccaggaaaaggtgagggggagctc
acctgtaaacccgcggagaggatgatgggtaccaggtatgagcactctaacttggggcca
actagtaacaactccgagtttagtaacaactattacactccaaggccctgttatgagcaa
catggcggacagcagcaacaaagcagtgggatggggataacgcactcctcggcacataac
agtatggataactcccacgaagcagggtaccacaacagccagtacaaccagtacccggca
taccgggcgggctacggcggcggggcctacgggatgatgggcccctcggggtgccggcaa
cctgggaacatgatgatgagcagcaactcctcagcaaaccacggcaagtctaccctggga
gccgcttcgggtggctttcaaaggttccccgggcaaactcagcagcagcagcagcatccc
tcaggggccaccccgaccctcaaccagctgctgacgtccccgagccccatgatgaggggt
tatggtggtgcctatcaagactacagcggaccctcggcgcagcagcaagcgggcatgggc
ctagggaaagacgtggggccacagtatggagccaactcggcccacggctggggagggcag
cagaggaaccacccgcattcaatgagtccaggcaacggagggcaaggcctcggcaggact
caggtgtcctccatggacttcatggctatgaagcgctcgcagctgtacggcatggccaat
aacccctactcggctccacagcagccaggggccggaccttaccctcctaaccagccatac
tcttcgcctcctccgcaccgatatccaatgagcatgcaggggaggggccaaatgggcatg
ggcgggatgcagtatcctcaacagcagcaggtggcgccgtatggccagcaggggatgggg
ggctacagccagcagcagcagcagcagcagcagccggggcagcagggaacccctccgtat
ttcagcccccctcagcagacccctccaggcccaacccagagcccctacctacagccacga
ccaccgccacaacaggaggcccagcaggagagctacagcaccaggggtccagccccaggg
aactctgggaagaccaacaatgaggatggcgtctcccaggaccgcccctccagtctgccg
gatctgtctggctccattgatgacctccccacagggacagagtctggtctgggctcaacg
gtcagcgccggcggctcctccagcagcagcagtagtagccaaggggagcaaggaggcgcc
agtaaccagggacagtcccctttctccccccacgcctccccacacctccacagccagagg
agcgggccctctccctcccctgtgggctcgcctgcaggctccactcagtcccagcagtcc
cgatcaggctctgggcccatctctcctgccagtggaccctctgccaacaccaccgcacca
ggttccaccatggccccgcagagctctggtaacggaccagatggatcccacccgccaatc
acacgctcacctatggctcaggagagagggttcatgtccaacatgcagaggaaccagacg
ggctcccagtttgcctctcctcaatctggacctcccatgtccccccacccctcacctggg
ggcccactgtattctgggatgggttcatactcccagagtggtcccacaggcccttatgga
cctcaaggatcacagtatggacaccaaggaaactaccctcggacctccaactacagtggg
gctgccagcaccagctacagcggccctggccctggcatgaccaatagtctggggatgaat
gctagcagccccatgcacggccaggggcccggacagcccatacccataggacgcagccat
ggaccagccaaccagaacagagtttacccccctatgggccccagctcccctagtatgccc
cagccagcaggaccaggaatgggccctccttctttgggtacctctaatcgcaaggcccaa
gaggcagcagcagccaccatgccaggctctgctaactcaacacacaacaggcagggcagc
tatcaaggccctggcatcaaccaggcgagctccatggccaccactgtcccctacagccag
caagcgggcaacaacggtccagccatgggcaacgcacaaggtccagcctacaatacactg
ccttcaggagccataggaatatcaggagatgggatgatgagcccagatgggaaactgaaa
accgaagcaaaagatgacagcggccccgccaacgagcctcacaaaccaaagctacaggac
agctacagcaacaataacagcaccagtggctcccagcagtatgtgtcccagccagccaca
ccaggcggtgccctacccgtgccctcccccctctctcccagcccggccagcctgtcctcc
tatcacggtgatgatagtgacagcatcagcagccccccctggcccctcaagaccccttcc
agtcctaaagccaaccctaactcctcctccctcggcggggagcgaatcacgcggctctat
gagctgggtgtggagccagagaggcggagctgggtggagcgctatctgtccttcatggag
gagaggggtacacctgtagcacagctgcccatagtgggcaagaagccactggacctctgg
aagctctacatggctgttcgagagataggaggcctggctatggtaaacaagaacaagaag
tggcgcgagctgtccaccaacctgaacgtgggtacgtcaagcagctccgccagctcgctc
aagaagcagtacatccagtatctgtttgcctatgagtgtaagatggagaggggagaagag
ccgccagcagacagcagcagcagcagcggcagtatggctggaggggacaacaggaagcag
gtcaaaatccagccgccatcacctgccaattcaggcggctccctccaaggcccgcagaca
ccccagtcctctggcagcagctctacagcagaggcagcaggggatctgaaacctccaact
cccaccaccacccctctgggacaggtcacaccactgcctcccaacaggagcagtgtgagt
gtacaggaccccttctcggaggtgagcgacccggccttccagaagcgtgctacctccctg
cctccctcagctccataccagcagggcctcagcatgcctgacatgatgatgaggatgcag
tacgacgccaaggaccccttcgccgggatgaggaagatggcaggagctgatccctacatg
ccaggccagatacccagtggtgggatgcaggacatgtatggtcggcccccgtcagccttg
agtatgagccaacgttcacagtacccatacgggccaggcttcgacagaagacacgatggc
tacggtcagcagtatcctggcatgccatatggaatgcatccatctgggatgtttccacag
caacagggctacaaacggcccatggatggtatatatggccccccacccaagagacacgag
agtgacatgtatgccatgcagtaccccaaccagcagccggacatttacaaccactatggc
ggtgggtactcaggtcctgaacacagacccatccagggacagttcccctacccctacccc
cgtgagcgtatggccccatcggggcagagccagcacagtatgatgggtgggggacccact
cctaaccacgctgctgatggccccaacatgtggccatccaggacagaccttggctatccc
taccccaaccgacaggggccgccatcacaaatggccccttatggctcaattggtagagat
gacatggacggacggcctggacaggatcagtggcaccgtcagtctccctacatgtcatca
tcaggtgggatgactcccctgtcatcacgtcagcccccatcatcctattctaactcccca
tccatggcaaaccacctgcctagagcacccagcccaggggccttccagcgttccatggac
tcccggatgtcacccagcaaaataccgttcatgtcacccatgaagatgcctaaacctggg
atggccatgatgggctctcagggccccgggccactgggtcagtttcctcccaacctgaga
aaggacctcaactacccgccaggatcagtggaagctaccataccgattctcaagcctcga
cgcaagcttacctccaaggacactggaacacctgaggcctggcgtgtgatgatgtctctg
aagtctggacttctggcagagagcacatgggctctagacaccatcaacatcctgctgtac
gatgacagcaccgtggcctcctttaacatctcccagttgcctggcttcctagagctcatt
gtagagtacttccgtcgttgtctcattgagatgtttggcatcctggaagagtatgaagtt
gggactgtggcgcacaaaagcctcagcacggaggaggctccacctgtcactaaagagcca
gtgtcatctgaggtgaatggcgagagagaagagtctgaggtgaacttaaaggatgacaag
aacaaagaagacagagaaaaagggggagatgaagaggagagtgaaaagggagcggagagt
aaaaaggaatgtgttgaccagcctgtcacagcgctagaacccagacctaaacaagccagc
aagtatgataagctccccatcaagattgtccataaagaggacgtaactgaagacatgaca
ggctatgtcactgagttcaccagcgggctgctgcactggcaggctggtggaggtgactcc
actgctcacattcagacacactttgaaccccgcagcgaaccacctacaaaggcagacgaa
aagatgaggaaagaaaacaaacaggaaaacaaaatggatgatgtgaagaaacaaccaagg
aaacatatcactgctactatcgatgatgttctgtgtgctagggttgacgccctctcttac
gcccaccctgcacgctctttgccatcctatccattcagggtgcattcagacggggagcag
gaccatatcactttgctggaggacgagcctcgatgcctggacgaggcaccactctccaca
acctctgcctggcaggactctctgaccaagcggtgcctctgcgtctctaacattatccgg
agcctgtcctttctcccggggaatgactcggatatgtcacgccaccctgctctggttctt
cttcttggcaggctcctcttgctgcaccaccagcacccagagagaaacaggtcgccccct
acctatcagagagatgaacagcaggagcaggggctgtcgagcagtaaagaggaatggtgg
tgggagtgtctgagcgtgctcagggagaatgccatggtcactctggccaatatctcgggc
cagttagatctctccacctatccagacactatctgtctccccatcctggatgggctgctc
cactggatggtgtgcccttcagctgaagcccaggaccccttcccatctgcagcacccttc
tcccagctcactcctcagaggctggtgctggagtgcctctgcaagctgagcatccaggac
ggtaacgttgacctcctgctagctacaccgcctttcagtcgacaggagaaactcttcact
gtcttgctccgctatgtgggtcagaggaaggcccaggtgtacagggagatggcagtggca
gtcctctcccacctggcacaaggagactccacagcagcgcgtgccatagccatgcagaag
ggcagcgtggggaatttggtgggcttcttggaggacggtgttagcatgtcgcagtaccag
cagaaccctcacagcttgttgcacatggggcatccccctatggacccaccaagtataaac
atgatgtgcagagcagctaaaggcctgttggccatggctaaagtagaagagaacaagaca
gagtttgtgctgtatgaaagcagattattagacatctccatttcctcagtgctcaacgtg
ggagtggtggccattatttgccaagttctctttcacttagggaaattatga
DBGET
integrated database retrieval system
