Scomber japonicus (chub mackerel): 128374989
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Entry
128374989 CDS
T09718
Symbol
ntn1a
Name
(RefSeq) LOW QUALITY PROTEIN: netrin-1a
KO
K06843
netrin 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
128374989 (ntn1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sjo00536
]
128374989 (ntn1a)
Glycosaminoglycan binding proteins [BR:
sjo00536
]
Heparan sulfate / Heparin
Axon guidance molecules
128374989 (ntn1a)
SSDB
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Paralog
GFIT
Motif
Pfam:
Laminin_N
NTR
EGF_laminin
EGF_LMN_ATRN
BNR_6
Motif
Other DBs
NCBI-GeneID:
128374989
NCBI-ProteinID:
XP_053191185
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All DBs
Position
2:complement(24934354..24995492)
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AA seq
606 aa
AA seq
DB search
MRRAVDVVLTVLLTVFLSCRSALGGYGMSLFAAQTSPPDPCYDEHGNPRRCIPDFVNSAF
GKEVKVSSTCGKTPSRYCVVTSADKVDERTRNCHTCDASDPKKYHPPAYLTDLNNPHNLT
CWQSENFXQYPQNVTLTLSLGKKFEVTYVSLQFCSPRPESMAIYKSMDYGKTWVPFQFYS
TQCRKMYNKPNRAVITKQNEQEAVCTDSHTDMHPLTGGLIAFSTLDGRPSAHDFDNSPVL
QDWVTATDIKVIFSRLHTFGDENEDDSELARDSYFYAVSDLQVGGRCKCNGHGSRCVKDR
DGSLVCECKHNTAGPECDRCKPFHYDRPWQRATAREANECVACNCNLHARRCRFNMELYK
LSGRKSGGVCLNCRHNTAGRHCHYCKEGYYRDLSKPISHRKACKACDCHPVGAAGKTCNQ
TTGQCPCKDGVTGITCNRCAKGYQQSRSPIAPCIKIPVTPPTTPASSTEEPSDCDSYCKA
SKGKLKINMKKYCKKDYAVQVHILKADKAGEWWKFTVNIISVYKQGESRIRRGDQFLWVR
AKDVACKCPKIKPGKKYLLLGNDEDSPGQSGVVADKGSLVIQWRDTWARRLRKFQQREKK
GKCKKP
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgagaagggctgtggatgttgtgctgactgtgctgctcaccgtgttcctgtcgtgccgg
agcgccctcggtggctacgggatgagtctgttcgcggcgcagacgtctcccccggacccc
tgctacgacgagcacggcaacccgcgacgctgcatcccggacttcgtcaactccgccttc
gggaaggaagtgaaggtgtccagcacctgcggcaagacgcccagccgctactgcgtggtg
acatcggcggacaaggtagacgagaggaccagaaactgtcacacctgcgatgcatcggac
cccaagaagtaccatccaccggcgtacctgacggacctcaacaaccctcacaacctcacc
tgctggcagtccgagaacttcnnccagtacccgcaaaatgtcaccctgactttgtccctt
ggcaagaagtttgaggtcacatatgtgagcctgcagttctgctcgcctcgacctgaatcc
atggctatttacaagtccatggattatggtaaaacttgggtaccctttcagttttactcg
acacagtgcaggaaaatgtacaacaagcccaacagggctgttatcacgaagcagaacgag
caggaggccgtctgcactgactctcacaccgacatgcatcctctgaccggcgggctcatc
gccttcagcacactggacggtagaccttcggcgcacgacttcgacaattcgccggtgctg
caggactgggttactgctaccgacattaaagtaatcttcagccggttacacacttttggt
gatgagaacgaggacgactcggaactggcccgggactcgtacttctacgcggtgtcggac
ctgcaggtcggagggagatgcaagtgcaacgggcacggatctcggtgcgtaaaggaccgg
gatgggagtctggtgtgtgagtgcaagcacaacaccgcaggaccagagtgcgacaggtgc
aaacctttccactacgacagaccgtggcagagagccacggccagggaggccaacgagtgt
gtcgcctgcaactgcaaccttcacgctcgaagatgtcgcttcaacatggagctgtacaag
ttatcagggagaaagagtggaggagtttgcctcaactgtcgccacaacaccgctggtcgc
cactgtcactactgcaaagagggctactaccgagacctgtccaaacccatctcacacagg
aaagcctgcaaagcatgtgattgccatcccgtgggtgctgctggcaaaacctgtaaccaa
accacaggacaatgtccctgtaaagacggcgtgactggtatcacgtgcaaccgctgtgct
aaaggctaccagcagagccgctcgcccattgcgccctgcataaagattccagtcacacct
cctacaactccagccagcagtacagaggagccctcagactgtgactcttactgcaaagca
tctaaaggcaaactgaaaatcaacatgaagaagtactgcaagaaagattacgctgtccag
gtgcacattctgaaggcagacaaggctggtgagtggtggaagttcacagtcaacattatc
tctgtctacaagcaaggcgagagccgcatccgccgcggggaccagttcctgtgggtccgt
gccaaagatgtggcctgcaaatgtcccaagatcaagcctgggaagaagtacctgctgctg
gggaatgacgaggactcccctggccagagcggagtagtggctgataaaggcagcctggtt
atccagtggagggacacatgggcacgcaggctcaggaagttccaacagcgtgagaagaaa
ggcaagtgcaagaagccatag
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