Scomber japonicus (chub mackerel): 128375092
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Entry
128375092 CDS
T09718
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03013
Nucleocytoplasmic transport
sjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128375092 (srrm1)
03015 mRNA surveillance pathway
128375092 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128375092 (srrm1)
03041 Spliceosome [BR:
sjo03041
]
128375092 (srrm1)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128375092 (srrm1)
Spliceosome [BR:
sjo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
128375092 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
128375092
NCBI-ProteinID:
XP_053191322
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Position
16:21077491..21087913
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AA seq
863 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKVMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKVDEDKKEKDKDIRDRAQSKSPRRRKTRSPSPRRR
SPVKRERKRSPSRSPRRKASPVGGSSPPPPLMQLPSKPLEQLVEPDTSGRAMPEPVVQEA
SSTCDTVVEVVKADSVTEVKEPSPEKIQKKEERPRSREREKDSRRERPHRSRSHSRSRRR
RSRSRSFSPRRRQSPRRRMSPRRRSPPRRGPTSSRHRHRRSPVRSRRRSRSASSSGSSSS
GSRSPKKAMKRISSTPPRKQAHHPDASISPAGKDRRSPSPRTRRGRGSASPPRSSGLKRK
QGGRGDSPSDNAKSRPSEGSESEEDKNEKGATADSVQQRRQYRRQNRQSSSDTGSSSSED
EGPKRPKAGPGARNGDVRRRRSRTPSPRRRHRDASPRKRRSPSPGGRRRRSPSPPRRRRS
PSPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPLPPQKRRFSSSPSKRSSPGAKRRPS
RSPKRRSSPAQRRRTPPSSASPPRHRRSPMLPSVRPSRDTRSPVAAASRLSPSPANRGRA
VRGSTSPQGRFETSSTSPCSQRRQSPSHTGKPIRRVSRTPEPRNNQRPSPSPQPMRRVSS
RSRSVSPQPAAQKRPAAASASPSPSRSASVSPPPAKKASSGSGSQSPSKNSDIDGSGKKK
KKKKEKKHKKEKKHKKHKKHKKEKSGAAGTGDGQENQGVDEDGESRKESDSEVDDSLDDL
EKHLREKALRSMRKAQMSPSQMS
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggcttcttccgcggcacaagtgcggagcaagacaaccggttcagcaacaag
cacaagaaactgctgaagcagcttaagtttgcagaatgtctggacaagaaggtggacatg
accaaagtgaacctggaagtcatcaaaccttggattaccaagcgagtgacagagattctg
gggttcgaggatgacgtcgtcatagagttcatatttaaccagcttgaggaaaagcacccg
gatagcaaggtgatgcagatcaacctgacaggtttcctgaatgggaagaacgccagggag
ttcatgaaggatctgtggcccctgctgctgagtgcccaggagaacattgctggcatccca
tcagcttttctggaacagaagaaagaggaaatcaaacagagacagattgagcaggagaag
ctagcgtctctgaagaaggtggatgaagataagaaggaaaaggacaaggacatcagagat
agagctcagtcaaagagcccaaggaggcggaagacaaggtcaccatcaccacggcgaagg
tcaccagtgaagcgagaaaggaaacgaagcccctcacgctcccccagacgtaaagccagt
ccagtcggaggtagttcacccccaccacctctgatgcagctgccctcaaaacctttggag
cagcttgtggagccggacacatcaggaagagccatgccggaaccagtcgtccaagaagct
tcttccacctgtgacacagttgtggaggtggtgaaagcagactcagtgactgaagtcaaa
gaaccctccccagagaaaattcagaagaaagaggaaaggccccggtctcgggaaagggaa
aaggacagcaggagggaacgacctcaccgctcccgttctcattcccgctctcgcagacga
cgctcccgttcaaggtctttttcccctcgtagaaggcagagtccaaggagaagaatgtct
cctcgtcgaagaagcccacccagacgaggtcccacaagctccagacacagacacaggcgc
tcccctgtccgcagcaggaggcgttctcgttcagcttcatcctctggcagcagctcctca
ggctcccgttcgcctaaaaaagcaatgaaaagaatatccagcactccaccccgaaaacag
gcccatcatccggacgcctccattagtcctgctgggaaagatagacggtcaccatctcca
cggaccagaaggggcagaggctcagcgtcaccacccagatcatctggtctgaagcgtaaa
caaggaggaaggggtgattctccatctgataatgccaaatccagaccttctgaaggatcc
gagtcggaggaggataaaaatgagaaaggggcaacagcagattcggtgcaacagcgacgt
cagtatcgcagacagaatcgacagtcgtcttcagatacagggtcttcctcttcagaagat
gaggggcccaagagaccaaaggcagggccaggtgccagaaatggtgacgtcaggaggcga
cgtagccgtacaccttctccacgaagacgacacagggatgcctctccaaggaaaagacgt
tctccatctcctggtggacgtagacgtcgctctccttctccgccacgacgtcgcagatct
ccctctcctcctagacgcaggtctccttctccacctccccgccgacgatctccatccccg
agacgttactccccccccatccagcgtcgctacagcccctcacctttacctccacagaag
aggagattttctagctctccctcaaaacgctcttctccaggggcaaagcgacgcccttct
aggtcccccaagcgcagaagttctcctgctcaaaggcggcgcacacctccttcttcagcg
tctccacccagacacaggagaagccccatgttgccttctgtgaggccaagcagggataca
cgatctcctgttgcagcagccagtcgcctctccccgtcccccgcaaaccgcggccgtgct
gttaggggttccaccagtcctcagggacgttttgaaacctccagtacatctccatgtagc
cagcggaggcaatccccctcacacactggtaaacccatccgcagagtttcccgcacccca
gagccacgtaacaaccagagaccgtctccgagccctcagccaatgaggagagtgtcctcc
agatccagatctgtttcccctcaaccagcagctcagaaacgtccagctgctgcatctgct
tccccctcaccatctcgctctgccagtgtgtccccaccaccagccaagaaggccagcagt
ggttcaggcagtcagtcaccaagcaagaactcagacattgatggcagtggaaagaaaaag
aagaagaagaaggagaagaagcacaagaaagagaagaaacacaagaagcacaagaagcat
aagaaggagaagagtggtgctgctgggactggagatggacaagagaaccagggtgtggat
gaggatggagaatcgagaaaggaatcagacagtgaagtagacgacagcctggacgacctg
gagaaacaccttagagagaaggccttgcgctccatgaggaaggcccagatgtctccatca
caaatgtcctga
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