Scomber japonicus (chub mackerel): 128375214
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Entry
128375214 CDS
T09718
Symbol
ubr1
Name
(RefSeq) E3 ubiquitin-protein ligase UBR1 isoform X1
KO
K10625
E3 ubiquitin-protein ligase UBR1 [EC:
2.3.2.27
]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128375214 (ubr1)
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128375214 (ubr1)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
UBR box proteins
128375214 (ubr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRT6_C
UBR1-like_wing
zf-UBR
ClpS
Motif
Other DBs
NCBI-GeneID:
128375214
NCBI-ProteinID:
XP_053191479
LinkDB
All DBs
Position
16:17078607..17098451
Genome browser
AA seq
1739 aa
AA seq
DB search
MAEGERSLGGLELSKEWQEAADSRADLIRYLKEQVPQIFCLKKESSPQEEEELMQSRLLH
PLECFLFGEDPQEGLEKLQQGSTSSQLCGRVFKEGETVYSCRDCAIDPTCVLCMDCFQDS
VHKSHRYKMHASSGGGFCDCGDVEAWKIGPCCSKHDPGAASAMVTDECVLEPELFERAEK
LFRVLLRYVTEFLVWEENFELSAELQPRAKDNAYYCVLYNDEHHSYDHVIYTLQRSVNCD
QAEAQTHTTLIDKEGRRAVKRGTLRSCQQAKDLIRSNSEHISLQPLRVEILHSTVMAHQT
FALRLGSWFQKIIGYSVGFRQAFSQVALEGNTDGESPCLISKLMLHDAKMYKGARKIVHE
LIFCSMLMETEFKRLFAIEFTKHYQQLQKDFINDDHERSISITALSVQIFTVPTLARQLI
EEGNVIKVIVDTVLALLHEHLDDNNRFFFLGYNSDKFSRIQVIFHDLRYILISKPSMWTE
ELRREFHEGLKVFLGLLKCMQGMEEVKRQFGQHIAVEPEWEAGFSLQIQLRHILAMFQDW
CSSDEEVLMLAFKECHKVLMQCNNQSFHKEANDYYMCKHIVHVRPYKVSQEPVSIHLPIS
RLLAGLYVLLCRTGAIERLHDPECYDFTQLVEHPLRCVVLAAQVSAEMWRRNGLSLVSQV
YYYQDVKCRDEMYDKDILMLQIAASKMDPNHFLMLILLRFELFDYFNGSCSSKDQDELIQ
WNRLTEEMLYLLIVIVGERYVPGISHVTKEDVTMREVVHLLCIEPMAHSSLVKGLPENES
HETGLETVIAKVATFKKPGVSGHGLYEVKKERLVEFNPFYYHYSRSQHSKAEESQKKRRV
QEGNDKALRPPVPPTFCPAFSSIVRLLCCDIIVHILRRVLQRAAEDRATHWTEAMIQRAL
HLIGQALLEEKMQLEDSTVEEVTFDFSIKARGIGSEHSKSVFLLLSKIMALPSLEAQKDM
VKWLLQMFEIVKCLREKSSPTASMSMETTKPEETVQDKEKAERKRKAEAAKLHRQKIMAQ
MSAMQKNFIESNKMLYDNMPESGAQGETAAPTESCAMEHMELCIAIGPHRGSTPAEREVL
TCILCQEEQEVVVQAPAMVLTACVQRSTVLTQCRGKIPTHRADAISYPLFMAPELAVGTH
TGSCGHVMHATCWQKYFEAVQNTTRNRLHAELIIDLENGEYLCPLCKSLCNTVVPLIPLE
QLTFNYENAEIIGQHLTMPRWIQILSARIKGLKSITQDNDSNTESNSGDGETGLCGEGQP
DFRSILSYGVQEPRKFSDSIAEMLVVCATTVHRVGLQTAPNEMCPRVPLMAWNTCAFTIQ
AIENILQEEGKPLFGSLQNRQLAGLKAIVQFSAAQRLKSSQAVIQRHFTDMLGALLPVLS
RKTTPSLLEVDFFHLLVGLVLSIPSLYQEEAVDLQPSAVSSAYNHLHILHLVTMAHVLQL
LLSSTDFPAVAGGEETEETRVAAELYSTVSQHAGRLIPDVSGSSVAERVKRGIEPFLRCA
ALFFNCLTGVHPPEDLFSTSVTSQGQVESLCGYLALPSNVFQLFQEHRDTVTPLLSTWCG
SPAVTKALKDKTQTVRYPRRRNRLIDLPEDYSALLNQASHFQCPKSTDDERKHPTLCLFC
GAMLCSQSSCCLSKLDGEDVGACTAHAATCGAGVGMFLRIRECEIVLMASKTRGSTYPAP
YLDDYGETDPHLVRGNPLHLCPERYRKLNQLWQQHCILEEIARSLEVVNVMFAFEWQML
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atggcggagggtgagagatccctcggcggactggagctcagcaaggaatggcaggaggct
gcagacagcagggcggatctgatccgctacctgaaggagcaggtgcctcagatcttctgc
ttgaagaaggagtccagccctcaggaggaagaagagctcatgcagagccgactcctccac
cctctggagtgcttcctgtttggagaggaccctcaggagggtctggagaagctccaacag
ggtagcacctcctcccagctctgtggacgtgtcttcaaagagggagagactgtctactcc
tgcagggattgtgcgatagatcccacttgtgtcctgtgcatggactgcttccaggatagt
gtgcataaaagccatcgttacaagatgcatgcatcatcaggcggggggttctgtgattgt
ggggacgtagaagcctggaagattggcccctgttgctccaaacacgacccaggggcagcc
tctgccatggtaacggatgagtgtgtgttggagcctgagttattcgagcgtgctgaaaag
ctattccgggtgttgctgcgctacgtcaccgagttcttggtgtgggaagagaactttgaa
ctatcagctgaactccagccacgggcaaaagacaatgcatactactgtgtgctgtacaat
gatgagcaccactcatacgaccatgtgatctacaccctgcagcgctctgttaactgcgat
caggctgaagcacagacacacacaacacttattgacaaagagggtcggcgggcagtaaag
agaggaactcttcgatcatgccagcaagcaaaagacctcatcaggtccaactccgagcac
atctccctgcagccactacgtgtggagatccttcactcgacagtgatggctcatcagaca
tttgctctgcgccttggctcctggttccaaaagatcatcggttactcagtgggcttcaga
caggccttctctcaggtggcactggagggtaacacagatggagagagtccttgcctcatc
agcaaactcatgcttcatgatgccaagatgtacaaaggagctcgcaagatagtacatgag
ctgattttctgtagtatgctaatggagacagaattcaagaggctttttgcaatcgagttc
acaaagcactatcagcagctgcaaaaggacttcatcaatgatgatcatgagaggagtata
tccatcactgcgctgtctgttcagatcttcactgtacccacactggccaggcagctaatt
gaagaaggaaatgtcatcaaagtcattgttgacacagtcttggcattgctgcatgaacat
ctggatgataacaatcgcttcttcttcctgggttacaactctgacaagttctctcgcatc
caagtcattttccacgacctcaggtatattcttatcagtaaaccctcgatgtggactgaa
gagttgcggagagagttccatgaggggttgaaagtctttcttgggcttctcaaatgcatg
cagggtatggaggaagtgaagcgccagtttggtcaacacattgcagtggagccagaatgg
gaggctggattttctctccagattcagctccgccacattcttgctatgtttcaggactgg
tgctcatctgatgaggaggtcttgatgcttgcatttaaagagtgccacaaagtcctgatg
cagtgcaataaccagtccttccacaaggaggctaatgactactacatgtgcaagcacatt
gttcatgttcgtccatacaaagtgtctcaggagcctgtcagcatacaccttcccatttct
aggctactggctggcctgtatgtacttctctgcagaacaggggcaattgaacgtctgcat
gatcctgagtgctatgacttcacacagctggtggagcatcctctgcgctgtgtagtgctg
gctgcacaggtctcagctgaaatgtggcggagaaatgggctctcattggttagccaggtc
tactactatcaggacgtgaaatgtagggatgagatgtacgataaagatattctcatgctt
cagatcgctgcttccaaaatggatcccaaccacttcctcatgctgatcttgttgagattt
gagctctttgattattttaatggaagttgttcaagcaaagaccaagatgaattgatacag
tggaatcgactgacagaagagatgctgtacctcctgatcgtcattgttggtgagcgttat
gtccccgggatcagtcatgtgaccaaagaggatgtgacaatgagggaggttgtccacctg
ctgtgcattgagcccatggctcacagtagcctggtcaaaggcctgccagagaatgagagt
catgaaacaggcctggagaccgtaattgccaaagtcgccaccttcaaaaaaccaggagtg
tcaggacatggattatatgaagtgaaaaaagagcgtctggtagagttcaaccctttctac
taccattattcaaggtcccagcatagcaaggcagaagagtctcagaagaagaggagagtt
caggagggcaacgataaagctctgcgtcctccagtgccccccaccttctgccctgctttc
tccagcattgtgcgtctgctctgctgcgacattattgtccacatcctcagacgtgtcctg
cagagagctgcagaggaccgggcgactcattggacagaagcaatgatccagagggccttg
cacctgatcggtcaggcattgcttgaagagaaaatgcagcttgaggacagcactgtggag
gaagtgacctttgattttagtattaaggcccgaggaattggttcagagcacagcaagtca
gtgttcctattgttgtccaaaattatggctcttccttccctggaagcccaaaaagacatg
gtcaaatggcttctacagatgtttgagattgttaagtgcctcagagagaagtccagtcca
acagcctccatgagcatggagacaaccaaaccagaggagactgttcaggacaaagaaaaa
gctgagcggaaaaggaaggcagaggcagccaaactccaccggcagaaaatcatggcccag
atgtcagcgatgcagaaaaacttcattgagtccaacaagatgctctatgacaacatgcct
gagagtggggcccagggagagacggctgcacctactgagagctgcgccatggagcacatg
gaactgtgtatagccatcggaccccaccgaggctccaccccagccgagagggaggtgctg
acctgcattctttgccaggaggagcaggaagtggtggtccaggctccagccatggtgctg
actgcttgtgtccagaggtccacagtgctgactcagtgtagaggaaagataccaacccac
agagcagatgcaatatcatatcccctcttcatggctcctgaactggctgtggggacccac
actggcagctgtggacatgtcatgcatgccacctgttggcagaaatattttgaggcagtc
cagaatacgaccagaaaccggctccacgctgaactgatcattgacctggagaatggggag
tacttgtgtcccctgtgcaagtcactgtgcaatactgttgtccctctcatccctttggaa
cagctaacattcaactacgaaaatgcagagataattggtcagcatttgaccatgccacgc
tggatccagatcctctctgctaggattaaaggactcaagtcaatcactcaggataatgat
tccaacacagaaagcaatagtggtgatggggagacagggctgtgcggagaggggcagcca
gacttcagatccattctgagctatggtgtacaagaaccgagaaaattctcagacagcata
gcagagatgctggttgtgtgcgccaccactgtccacagggtaggtctgcagacggcaccc
aatgagatgtgcccacgtgtgccccttatggcctggaacacctgtgccttcactattcag
gccattgaaaacatattgcaggaagagggcaagccactctttgggtccttgcaaaacaga
cagcttgcaggtctgaaggcgattgttcagttttcagcagcccagagacttaagagctcc
caggctgtcatccaaaggcatttcaccgatatgttgggagccttgctgccggtcctgagc
agaaagaccaccccctctcttctggaggttgacttcttccatcttctggtgggtttggtg
ttgtctataccctcactgtatcaggaggaggctgtagacttacagccgtctgctgtcagc
tctgcctacaaccacttgcacatcctgcatctggtcaccatggctcatgtgctgcagctt
ctcctctcctccacagatttccctgctgtagcaggtggagaggagacagaggagaccaga
gtggcagcagagctttactccacagtgtcacaacacgctggaaggctgattccagatgtg
tctggcagttctgtggcagaaagagtgaagagaggcattgaacctttcttgcgctgcgct
gctctctttttcaattgccttacaggagtacatcctcctgaggatctttttagcacttct
gttacttctcaaggacaggtggagtcactatgcggttatttggcactaccctccaatgtg
ttccagctcttccaggagcacagagacactgttactccactgctgtccacgtggtgtggg
agcccagctgtaaccaaagccctgaaagacaaaacccagacagtcagatatcctagaaga
aggaatcgattaattgatcttcctgaggattacagtgctctcctcaatcaagccagccat
tttcagtgtcccaagtctacagatgatgagaggaagcacccgaccctgtgcctgttttgt
ggcgccatgctctgctctcagagctcctgttgtcttagcaagctggatggggaagacgtt
ggagcctgcaccgcccacgctgctacttgtggtgcaggagtgggcatgttcctcaggata
agagaatgtgaaattgtactgatggccagtaaaactcgaggaagcacatatcctgctcct
tacctggatgattatggggagactgatcctcaccttgtacggggcaatccattgcacctt
tgtccagagcgttacaggaagttgaaccagctatggcaacagcactgcatcttggaagaa
atcgcccgcagcctggaggtggtcaacgtcatgtttgcattcgagtggcagatgttgtga
DBGET
integrated database retrieval system
