KEGG   Scomber japonicus (chub mackerel): 128375267
Entry
128375267         CDS       T09718                                 
Name
(RefSeq) RNA polymerase II elongation factor ELL-like
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    128375267
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:sjo01009]
    128375267
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sjo03021]
    128375267
Protein phosphatases and associated proteins [BR:sjo01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     128375267
Transcription machinery [BR:sjo03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     128375267
    Little elongation complex (LEC)
     128375267
SSDB
Motif
Pfam: ELL Occludin_ELL Seryl_tRNA_N
Other DBs
NCBI-GeneID: 128375267
NCBI-ProteinID: XP_053191545
LinkDB
Position
16:complement(11887793..11897526)
AA seq 625 aa
MSALKENQSYGLSSGKLSRGGNVSVIHVKLTDSAARAISTYQNGKGWSSCPAICFNGNQG
RITIPCLKDRDEVKVFTFGVTNVASDNPHGSFDCVQQLSNGAADELSCLGVIQKKMTVKA
TDESYDKALQSMAQAEEETRSRGAIVIKHGGRFQGKKVTVRAPAPALASLTKPRHSPQSL
LSNIKKGVGMSKPRKGACASNRKGMNDIQERPLRDRVKHLLALRPYKRPELILRLQNDGL
TAAESDMLDSVVMEVGQLNTRDNAFVLKDSLYKELQKDWPGYTTGDQQLLKRILVRRLFQ
PQQNLLSVPEAQVSPLRDTPNSSPAHRPKHSLPEEYTDPLVSKKPRISHLSSKTVSVKSR
RSRPSEQVAHKEVTPATADDRQRNSLDPRKLFDSLQSAVCQQEADVTDRLKPTPCAQEEP
EGPADHRQPNSDRPSSPLIVPDLDRHTIKRKKSKHKHRDREERWSDRKEKRKDHSTEGSN
KKVSLDCTDPEEMLFDSNVLRADNDTVDYLSTYAAIGSHDQRQRYKQDFNKEYSEYRDLH
ARIDGVTRQFMELDAQLKQLHHESRKYKTVHNKILQEYRQIKKFNPNYHQDKVRCEYLHS
KLAHIKKLISEYDQQQLSAHRSFPN
NT seq 1878 nt   +upstreamnt  +downstreamnt
atgtcggcgcttaaggagaaccagtcttacggtctgtccagtggtaaactgagccgcgga
ggtaacgtctctgttattcacgtcaaactcactgacagcgcggctagagccattagcacc
tatcaaaacggcaagggctggtcctcctgtcccgccatctgttttaacggaaaccaaggg
agaatcacaatcccttgcttgaaggatagagatgaagtgaaggttttcacctttggcgtg
actaatgttgcctctgataatccacatggaagctttgactgcgtccaacagctcagcaat
ggtgctgctgacgagctgtcatgtctcggggtgattcagaagaagatgacagtcaaagcc
acagatgagtcgtatgataaggctcttcagagcatggctcaagctgaggaggagacacgt
agccgaggggccattgtcatcaaacatggggggcgcttccagggcaagaaggtgacagtg
cgagcaccggccccagcgctggccagcctcaccaaacctcgtcactcccctcagtccctc
ctcagtaacattaagaagggggtcggcatgtccaagccgaggaagggcgcctgtgcatct
aacaggaagggcatgaatgacatacaggagagaccgctcagggaccgggtgaaacatctg
ctggctctgagaccatacaagagacctgagctgatcttgagactgcagaatgatggactg
acagcagcagagagtgacatgctcgactctgtggtgatggaggttggccagttgaatact
agagacaacgcttttgtactaaaggacagtctgtataaggagctgcagaaggactggcct
ggctacaccacaggggaccagcagcttcttaaacgaatccttgtcaggagactgtttcaa
ccacaacagaacctcctctctgttcccgaggcccaggtcagcccactgcgagacaccccc
aactcctccccagcacatcgcccaaaacattccctgccagaggaatacactgaccctctt
gttagcaagaaacccaggatatcccacttgtctagcaaaacagtcagtgtcaagtcaaga
agatcgaggccgtctgaacaagtggctcataaagaagtcacaccagcgacagcagatgac
agacaaaggaactcgcttgatcctcgaaagctttttgactccttgcagtcagcagtctgt
cagcaggaagcggatgtgactgacaggctgaagccaactccctgtgctcaggaggagcct
gagggcccagcagaccaccgtcaacccaactctgatcggccctcgtcccctctgatagtg
cccgatctggacagacacacaatcaaaaggaagaagagcaagcacaaacacagagacagg
gaggagaggtggagtgacaggaaagaaaagagaaaagatcacagcacagagggttcaaac
aagaaagtctctctggactgcactgaccctgaagaaatgttatttgactctaatgtgctc
cgagcagacaatgacacagtggattatttatcgacgtatgcagcgattggtagccatgac
cagagacagaggtacaaacaagactttaacaaggagtacagcgagtacagagatttacat
gcccgcatcgacggtgttacgcggcagttcatggagctagacgcacagctcaaacagcta
caccacgaatcacgtaaatacaagactgttcataataagattcttcaagagtatcgtcaa
attaaaaagttcaaccccaactaccaccaggataaggttcgctgtgagtatctacacagc
aaactggcccacataaagaagctcatatcagagtacgaccaacaacaactcagcgcgcac
cgttcctttcccaactga

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