Scomber japonicus (chub mackerel): 128375289
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Entry
128375289 CDS
T09718
Symbol
lrp4
Name
(RefSeq) low-density lipoprotein receptor-related protein 4 isoform X1
KO
K20051
low-density lipoprotein receptor-related protein 4
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128375289 (lrp4)
Membrane trafficking [BR:
sjo04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
128375289 (lrp4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
Ldl_recept_a
FXa_inhibition
SGL
Vgb_lyase
cEGF
EGF_LRP2
DUF5050
EGF_CA
EGF_3
Motif
Other DBs
NCBI-GeneID:
128375289
NCBI-ProteinID:
XP_053191614
LinkDB
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Position
1:33423615..33547773
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AA seq
1919 aa
AA seq
DB search
MQLAAVLWGALITLLLSQSPGVQGSTECSCGRNHFTCAVSAFGECTCIPAQWQCDGDNDC
GDHSDEDGCMLPTCSPLDFHCDNGKCIRRSWVCDGDNDCEDDSDEQDCPPRECEEDEFHC
QNGYCIRSLWHCDGDNDCGDNSDEQCDMRKCSDKEFRCTDGSCIAEHWYCDGDTDCKDGS
DEENCPSDVMTATCSVEEFQCAYGRCILDIYHCDGDDDCGDWSDESDCSSHQPCRSVEFM
CSSGMCINAGWRCDGEFDCDDQSDEKNCTTSMCTADQFRCGTGRCVRLSWRCDGEDDCSD
RSDEEGCEKTENPPCASDQFQCGNGRCIGQRKVCNEANDCGDGTDEHPHHDCRPRSSEGN
CNQNNGGCSQKCQMVRGLVQCTCHTGYRLMDDGRTCQDVDECAEEGYCSQGCTNTEGGFQ
CWCVQGYELRPDKRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHH
SRELVFWSDVTLDRIMKANLNGSNVEEVVSTGLESPGGLAIDWIHDKLYWTDSGTSRIEV
ANLDGTQRKVLLWQNMEKPRAIALHPIEGKIYWTDWGNTPRIEYANMDGSNRRVIADTHL
FWPNGLTIDYAGRRMYWVDAKHHVIEKADLDGRNRKAVISQGLPHPFAITVFEDSLYWTD
WHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGGRNRCGTNNGGCSHLCLPS
NKTYTCACPTGFKKVDHHSCANSLDKFLLFARRTDIRRISFDTEDMSDDVIPLADVRNAV
ALDWDAKDGYIYWTDVTTDSINRALWNGTKQEVVVDTSLESPAGLAIDWVTNKLYWTDAG
TDRIEVSNADGSMRTVLIWENLDRPRDIVVDPIGGFMYWTDWGANPKIERAGMDASSRIV
IISSNLTWPNGLAIDYETKRLYWADAGMKTIEFGNFDGSDRQVLIGTQLPHPFGLTVHED
KLYWTDWQSKSIQSAGKLTGLGRHTLAENLENLMDIHMFQRHRETVRNPCAVNNGGCSHL
CLLAPAPKASSCACPTGINLQTDGKTCTPGMSSFLVFARRTDIRMVSLDIPYFADVVLAV
NSSMKNTIAIGVDAKEGKVYWSDSTLKKISRANINGTADEDIISTGLMTTDGLAVDAVGR
KIYWTDTGTNRIEVANLDGSMRKVLVWQNLDSPRAIALYNEMGYMYWTDWGEHAKLERSA
MDGSDRVVLISNNLGWPNGLAIDMAGSQLLWADAHTERIEAADLNGQNRHTLVTPVQHPY
GLTLLGPHIYWTDWQSRSIQRADKTSGSNTITVRSNLPGLMDIQAVDREKPLGFNKCGRR
NGGCTHLCLPRPNGTSCACPTGILLKGDGRSCEDSPETYLLFSNRVSVRRISLDTNDHTD
VHVPVPELHNVISLDYDSVDGKLYYTDVTLDVIRRADLDGTNMETVISQGLKTTDGLAVD
WVARNMYWTDTGRNTIEVARLDGTSRKVLVNNSLDEPRAIAVFPSKGFLFWTDWGHIAKI
ERSHLDGSDRKVLINTDLGWPNGLTLDYDTRRIFWVDAHLDRIESSDLNGKLRQTLVNPV
SHPFALTQLKPVSSPLTPFSRLSQQDRWIYWTDWQTKSIQRVDKHTGRNKETVLANVEGL
MDIIVVSPHRQTGTNLCGVNNGGCTHLCFAKTNSFVCACPDEPDGRPCSTISGYVPTAPA
RGTSSTPIPNKIPKAPTDTPHRGPSLVNCTDKNQNVEGCSQSNVVSAPHGEGLHISYVIG
GVLTILAILILIAALIIYRHKKSKFADPGVSNLTYSNPSYRTSTQEVKIEASQKPPIYNQ
LRYKKEGGGDGGYTKEKIRIVEGVCLLSNDELYWDDLKQIKPSRGGLHTCMRTDTVSLQA
SSASLDDGETEQLLQEEASECSSITTLTPSAITPQRHAQHSLPDTGWASTRKPSTESEV
NT seq
5760 nt
NT seq
+upstream
nt +downstream
nt
atgcagctggccgcggtgctgtggggcgccctgataactttactgctcagccagagtcca
ggagttcagggcagcactgagtgttcatgtgggaggaaccacttcacgtgtgcggtcagc
gcgttcggggagtgtacctgcatcccggcccagtggcagtgtgacggagacaacgactgc
ggggatcacagcgatgaggacggatgcatgctccccacctgctcgccgctggacttccac
tgcgacaacggcaaatgcatccgacgctcctgggtgtgtgacggagacaacgactgcgag
gacgactcggatgaacaggactgtcctcccagggagtgcgaggaggacgagttccactgc
caaaacggctactgtatccgcagcctctggcactgtgacggagacaacgattgtggggat
aacagtgatgagcagtgtgacatgcgtaaatgttcagacaaggagtttcgctgcacagat
ggcagctgtatcgctgagcactggtattgtgacggagatacggactgtaaagatggatca
gatgaggaaaactgcccttcagatgttatgacagccacctgcagcgtggaggagttccag
tgcgcatatggccgctgtatcctggacatctaccactgcgacggagacgacgactgcggg
gactggtcggatgagtcggactgctcctcccaccagccctgcagatcagttgaattcatg
tgcagcagtgggatgtgcatcaatgctggctggaggtgtgacggcgagtttgactgtgat
gaccaatcagatgagaagaactgcaccacatccatgtgcacagctgaccagttccgctgt
ggaactggacgctgtgtccggttgtcatggagatgcgatggtgaggatgactgctcggac
cgcagcgatgaagagggctgtgagaaaaccgaaaaccctccatgtgcttcggaccagttc
caatgtgggaatggacgttgtatcggtcagaggaaggtgtgtaacgaggccaatgactgc
ggagacgggactgatgaacacccacatcatgactgccgtccacgctccagcgagggcaac
tgtaaccagaataacggaggctgctcccagaagtgtcagatggtcagaggactggtccag
tgcacctgtcatactggataccgactgatggacgacggcaggacctgccaggatgtggac
gagtgtgctgaagagggctactgcagccagggctgtaccaacacggagggggggttccag
tgctggtgcgtccagggctatgagctccggcccgacaagcgcagctgcaaggctctgggt
ccggagccggtgctgttgttcgccaaccgcatcgacatccgtcaggttttgccacatcgc
tctgagtataccctgctgctcaacaatctggagaatgccattgcgctggacttccaccac
agccgcgagctggttttctggtccgatgtgacactggaccgcatcatgaaggctaacctc
aacggctccaacgtggaggaggtcgtctcaaccggcctggagagcccaggtggactggcc
atagattggatccatgacaaattgtactggacagactctggaacgtcccgcatcgaggtg
gcaaacctggacggcacgcaacgcaaggtgctgctttggcagaacatggagaagcctcga
gccatcgcgctgcatcctatagagggtaagatctattggacagactggggcaacacgcct
cgcattgaatatgccaatatggacggctcgaaccggcgggtcatcgcagacactcactta
ttctggccaaatggcctcaccatcgactacgctggccgtcgcatgtactgggtggacgcc
aagcaccatgtcatcgaaaaggcagacctggacggacgcaatcgcaaagctgtcatcagc
caaggcctaccccacccgttcgctatcacagtgtttgaggacagcctctactggaccgac
tggcacaccaagagcatcaacagtgccaataaattcaccggcaagaaccaggagattatt
cgcaacaagctccactttcccatggacatccataccctgcaccctcagaggcagcctgca
ggaggcaggaaccgctgtggcactaacaatggaggctgcagtcacctgtgtctccccagc
aacaagacgtacacctgcgcctgtcccaccggcttcaagaaggtggaccaccacagctgt
gccaacagtcttgacaagttcctgctttttgcccgaaggacggacatccgacgaatcagc
tttgatacagaggacatgtccgatgatgtcatccctctggctgacgtgcgcaatgccgtg
gcactggactgggatgccaaagatggctacatctactggacagacgtcaccactgactcc
atcaacagagctctgtggaacggcactaagcaggaggtggtggtggacaccagtctggag
agcccagcaggtttggcgattgactgggtgaccaacaagctgtattggactgatgctggt
acggatcgtatcgaggtttcaaatgcagatgggagcatgcggactgtgctgatatgggag
aacttggaccgtccaagggacatcgtcgtcgaccccattggaggtttcatgtactggacc
gactggggtgccaacccaaagattgaacgtgcaggaatggacgcttccagtcgcattgtc
attatctcatccaatctgacgtggccaaacgggctcgccatcgactatgagactaaacgt
ctgtactgggctgatgctggcatgaaaactattgaatttggcaactttgatggttctgac
cgacaggttttgattggcacccagctgcctcaccccttcggcctgactgtacatgaggac
aagctgtactggacagactggcagtccaagagcatccagagtgctggcaagctcactggc
ttgggacgacacactttggctgaaaacctggagaacctcatggacatacacatgttccag
agacaccgtgaaacagttcgtaacccgtgtgctgtgaataatgggggttgcagtcacctc
tgtctcctggctcctgctcccaaagcctccagctgtgcctgtcccactgggattaacctg
cagacggatggaaagacctgcacgcctgggatgagcagcttcctcgtatttgcacggagg
acggacatcaggatggtttctctggacattccctactttgcagatgtggttcttgccgtc
aacagctccatgaaaaacactattgccattggcgttgatgccaaagaaggaaaagtgtat
tggtctgacagtacactgaagaaaatcagcagagccaacatcaatggaacagcagatgaa
gacatcatatctacagggttgatgacaactgatggcctggcggtggatgctgttggtaga
aagatctactggacagacacaggaaccaaccgcatcgaggttgctaacctggacggctcc
atgaggaaagttctcgtctggcaaaacctcgacagccctcgagccatcgccctctacaat
gagatgggttatatgtactggacagattggggagagcatgctaagcttgagcgctctgca
atggatggatcagatcgtgtagtactcatcagtaacaacctgggctggcccaacggcctg
gccatcgacatggccggctcacagttgctgtgggctgacgctcacactgagcgtatcgag
gccgccgacctgaacggacagaatcgccacaccctcgtgactccagtccagcacccgtac
ggtttgaccctactgggtcctcacatctactggaccgactggcagagccgcagcatccag
cgtgccgataagaccagcggatccaacaccatcactgtgcgatccaacctgccaggcctg
atggacatccaggctgtggacagggagaagccgctgggttttaataagtgcggcaggagg
aacggaggctgcactcacctgtgtctgcctcgtcccaacggtacatcctgcgcctgcccc
accggcatcctgctcaagggtgacggtaggtcatgtgaagactccccagagacgtacctg
ctcttctccaaccgcgtcagtgtgcggaggatctccctggacaccaatgatcacactgac
gtgcacgtaccggtgcccgagctgcacaacgtcatctctctggactacgacagtgtggac
ggaaaactttactacaccgatgtcaccctggatgttataaggcgtgctgacctggacggc
actaacatggagactgtgatcagccagggcctaaagaccactgatgggttggctgtggac
tgggtggccaggaacatgtactggaccgacaccggaagaaacaccatcgaggtggctcga
ctggacggaacaagccgcaaagtcctggtcaacaacagtttggacgaaccccgagccatc
gcagtgttcccgagcaaagggttcttgttttggactgactggggtcacattgcaaagatc
gagcggtctcacctggacgggtcggacaggaaggttctgatcaacaccgacttgggttgg
cccaacggtctcactctagactacgacacacgcaggatattctgggttgacgcccacttg
gacaggattgaaagttcggacctgaatgggaaactgcgtcagacccttgttaacccggtg
tcccaccccttcgctctgactcagttgaagccggtgtcctcccctctaactcctttctcc
cgactctcgcagcaagaccgctggatctactggacggactggcagactaagtccattcag
cgggtggacaaacacaccggccgcaacaaggaaaccgtgctggccaacgtggagggcctc
atggacattatagtggtatcacctcacagacagacaggtaccaacctttgtggagtgaac
aatggcggatgcactcacctctgcttcgccaagaccaacagttttgtgtgtgcgtgcccc
gatgaaccagatgggcgaccctgttcaactatttcaggttacgtccccactgctcctgcc
agaggaaccagcagcaccccgatccctaacaagatccccaaagctccaacagacacacca
cacagaggaccgtcactggtcaactgcactgacaagaatcaaaacgtcgaaggctgctca
cagagcaacgtggtgtctgctcctcatggagaaggacttcatatcagctatgtgattggt
ggagttctgaccatcctggctattctgatcctcattgccgctttgattatttacagacat
aaaaagtcaaagtttgccgacccgggggttagcaacctgacctacagtaacccctcatac
cggacgtctacgcaagaggtcaagattgaggcgtcgcagaagcctccaatatataaccag
cttcgatataaaaaagaggggggaggagatggaggatacaccaaggagaagattcgcatt
gtggagggcgtgtgtctcctgtccaatgatgagctttattgggatgacctaaaacagatc
aagccgtcccgaggcggcctgcacacctgcatgcgcacagacaccgtctcgctgcaggcc
agcagtgcttcgttagacgacggcgagacggagcagctcctccaggaggaggcatctgaa
tgctcctccataaccaccttgaccccatcagccatcaccccacagcgtcacgcccagcac
agcctgcccgacaccggctgggcctccacgcgcaagccctcaactgagagtgaagtgtga
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integrated database retrieval system
