KEGG   Scomber japonicus (chub mackerel): 128375361
Entry
128375361         CDS       T09718                                 
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03082  ATP-dependent chromatin remodeling
sjo03083  Polycomb repressive complex
sjo04110  Cell cycle
sjo04330  Notch signaling pathway
sjo04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    128375361
   03083 Polycomb repressive complex
    128375361
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    128375361
   04350 TGF-beta signaling pathway
    128375361
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    128375361
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sjo03036]
    128375361
Enzymes [BR:sjo01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     128375361
Chromosome and associated proteins [BR:sjo03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     128375361
   HDAC complexes
    Sin3A-HDAC complex
     128375361
    BRAF-HDAC complex
     128375361
    REST complex
     128375361
    SHIP complex
     128375361
    MiDAC complex
     128375361
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     128375361
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    128375361
  Chromatin remodeling factors
   NuRD complex
    128375361
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 128375361
NCBI-ProteinID: XP_053191671
LinkDB
Position
16:complement(21038405..21044146)
AA seq 490 aa
MALTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSGGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDTSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEDDPNKRISIRAHDKRIACEEE
FSDSEDEGEGGRRNAASFKKAKRAKTEGEKEGEEKEKKGEEEKKEVKEEEKVPEEEKMDT
SKPKEESKTP
NT seq 1473 nt   +upstreamnt  +downstreamnt
atggcgcttacttctcaaggaacaaagaaaaaagtttgctactactatgatggtgatgtt
ggaaattattactatggtcaaggccatcccatgaaaccccaccgaatccgcatgacgcac
aacttgttgctcaactatggcctatacagaaagatggagatatatcgtccacacaaagcc
agcggagaggagatgaccaagtatcacagtgatgattacattaagttcctgcgttccatc
cggccagacaacatgtcagagtacagcaaacagatgcagagatttaatgtgggggaggat
tgtccggtgtttgatggtttattcgagttctgccagctctcaggagggggctccgttgct
ggtgcggtgaagttgaacaaacagcagacagacatagccattaactgggctggaggtctg
catcacgccaagaagtctgaggcctctgggttttgctatgtcaacgacatcgtattggct
attctggagttactgaaataccaccagagagttctgtacattgatatcgacatccatcat
ggagatggtgtggaggaggccttctacaccaccgaccgtgtcatgacagtttccttccac
aagtatggagagtactttcccggcactggtgacctgagggatattggagctgggaagggt
aaatactatgctgtgaattacccactgagggatgggattgacgatgagtcatatgaagcc
atattcaagcctatcatggccaaagtgatggagatgtaccagcccagtgcagtggttctg
cagtgtggtgctgattccctgtccggagatagacttggctgctttaacctcaccattaaa
ggccatgccaagtgtgtggagtacatgaaaagcttcaacctgccactactaatgttgggt
ggaggaggctacaccatccgcaatgtggcgcgctgctggacatatgagactgctgtagct
cttgatacctcaatccccaatgagctcccatacaatgactactttgagtactttggacca
gacttcaagctgcacatcagcccctccaacatgaccaaccagaacaccaatgactacctg
gagaagattaagcagcgtttgtttgagaacttgcgtatgctgccccatgctcctggagtg
cagatgcaggccatcccagaggacgccgtacaggaggacagtggagacgaggaagaggac
gaccctaacaaacgcatctccatccgcgctcatgacaagaggatagcatgtgaggaggag
ttctctgactctgaggatgaaggcgaaggaggacgcagaaacgcagccagcttcaagaaa
gccaagcgagccaagaccgaaggagagaaggaaggagaagaaaaggagaagaaaggtgag
gaggaaaagaaagaagtaaaagaagaagaaaaggtgccggaggaggagaaaatggacacc
tcaaagccaaaagaggagtccaagacaccttga

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