Scomber japonicus (chub mackerel): 128375555 Help Entry 128375555         CDS       T09718                                  Symbol vps39 Name (RefSeq) vam6/Vps39-like protein   KO K20183   Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 Organism sjo  Scomber japonicus (chub mackerel) Pathway sjo04140   Autophagy - animal sjo04148   Efferocytosis sjo05132   Salmonella infection Brite KEGG Orthology (KO) [BR:sjo00001]  09140 Cellular Processes   09141 Transport and catabolism    04140 Autophagy - animal     128375555 (vps39)    04148 Efferocytosis     128375555 (vps39)  09160 Human Diseases   09171 Infectious disease: bacterial    05132 Salmonella infection     128375555 (vps39)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:sjo04131]     128375555 (vps39) Membrane trafficking [BR:sjo04131]  Endosome - Lysosome transport   Tethering complex    Hops complex     128375555 (vps39) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Vps39_1 CNH zf-Vps39_C Clathrin TPR_Vps41 WD40_like Beta-prop_RIG_2nd P16-Arc EAD11 Motif Other DBs NCBI-GeneID:  128375555 NCBI-ProteinID:  XP_053191909 LinkDB All DBs Position 16:7106822..7132602 Genome browser AA seq 875 aa AA seqDB search MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQQTSPGE ERLRMCVAVKKKLQMYYWKDREFHELQGDFGAPDIPKSMAWCENSICVGFKRDYYLIRMD GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI ASQIRQLLQDKQFELALQLAMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDDSMQVFAKL GTDPTHVIGLYPDLLPSDYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQLN DSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEESE YVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGVENLGI IFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKDGFKELAIPYLEHIVYVWDD KGPEFHNVLIQLYLERVQSLMKQYLNSLPEGVPAVAAGKEDGALGEFRNKLLSFLDISSS YEPARLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEDYCRRYYNSSVEG NKDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLQAALQVLELHHSKLNTTKAINLLPA NTQIREIRVFLESVLEEKAQRKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTCR VCKKKIGNSAFARYPNGVVVHYFCCKDRNVCPTEQ NT seq 2628 nt NT seq  +upstreamnt  +downstreamnt atgcatgacgcgtatgaaccagtgcctattttggagaagcttcctctccagattgactgt ctggcggcctgggaggactggctgcttgttggaacaaagccagggcatctcctcctctac cgaataaagaaggatgcaggcaccaaccggtttgaagtgacgctggagaaatccaataag aacttctcaaagaagattcagcagctttacgtcgtctcacaatacaaaattcttgtcagt cttctggagaacaacatccacgtccatgacctcctgacctttcagcagatcactgtggtg tccaaagccaaaggagccacgctcttcgcttgtgacctgcagcaaaccagcccaggagag gaaagattgagaatgtgtgtcgctgtgaaaaagaaactccagatgtattactggaaggat cgggagtttcatgagctgcagggagattttggtgcaccagatattccgaagtcaatggcg tggtgtgaaaactccatatgtgtcggtttcaaacgagactattacctcattcggatggat ggacggggctccataaaggaactctttcccactgggaagcagttggagcctctggttgcc ccgctggctgatgggaaggtggcggtggggcaggatgatctgactgtggtactaaatgaa gagggtgtttgcactcagaagtgtgctctgaactggacagacatccctatagcaatggag caccagcctccatacatcatagcagttctccctcggtatgtggagatccggacctttgag ccgaggctgcttgtgcaaagcgtggagctgcagagacctcgcttcatcacctcggcaggg ccaaatattgtgtacgtagccagcaaccactttgtgtggcgcctggttcccgtgtcaata gccagccagatacgacagcttcttcaggacaagcagtttgagttggctcttcagttggcg atgaaggacgattcagatggtgataagaagcagcagatacatcacatccagaatctctac gccttcaatctgttttgccagaagagatttgatgactccatgcaggtttttgccaaactc ggcacagatcccacccacgtcattgggctgtacccggacctgctcccgtcagactatcgc aagcagctgcactatcccaacccactgcctacgctgtctggggcagagctggagaaggct catctcgctctaattgattatcttacccagaaacgcagccaccttgttaaacagctgaat gactctgacccctccacaacatctccactcatggagggcacacccactattaaaagccgc aaaaagctccttcagatcattgataccaccctgctgaagtgttacctgcataccaacgtg gccctggtgtcccccctccttcggctggagaacaaccactgccacattgaggagagcgag tacgtcctgaagaaggcccacaaatacagtgagctcattattctctatgagaagaagggc ctgcaccagaaagctctgcaggtgctgcttgaccagtccaccaaggccaactctccactg aagggccacgagcgaacagtgcagtacctccaaaggctcggagtggagaatctcggcata atctttgagttttcaccctgggtacttaagatttgccctgaagatgggctaaagatcttc actgaggacctgacggaggtggagactttacccagagacaaggtgctgaacttcctgaag gatggctttaaggagcttgccatcccgtatttggagcacatcgtctacgtgtgggacgat aaaggccccgagtttcacaatgtgttgatccagctctacctggagagggttcaaagcctc atgaaacagtacctcaactcactgccagaaggagttccagcagtagctgcggggaaggag gacggtgctctgggagagttcaggaacaagctgctgtcgttcctggatatttcttccagc tacgaaccagcaagactcatcagtgactttccctttgatggcctcctggaggaacgggcc ctgcttctaggaaggatgggtaaacacgagcaggcacttttcatctatgtgcacatcctg aaagatactcgcatggctgaagactactgtcgccggtactacaacagttcagtcgaaggg aataaagacgtttatctgtctctgctgcggatgtacctctcaccccctgacgtccactgc ttggggcccatcaagatggagctgtcggagccacaggccaacctccaggcagccttgcag gtcctggagcttcaccacagcaagctcaacaccaccaaggccatcaatctgctcccggca aacacccaaatccgagagatccgggtcttcctggagagcgtcctggaggagaaagcacag aggaaacgctgcaaccaggtgctgaagagtctcctgcaggcggagttcctcagggtgcaa gaggagcgtatcttccaccagcaggtgaaatgtgtgattactgaagaaaagacctgcagg gtctgcaagaagaaaataggaaacagtgcgttcgccaggtatcccaacggcgtggtggtt cattacttctgctgcaaagaccgcaacgtgtgtcctactgagcagtaa

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