Scomber japonicus (chub mackerel): 128375703
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Entry
128375703 CDS
T09718
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128375703 (scaf8)
03041 Spliceosome [BR:
sjo03041
]
128375703 (scaf8)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128375703 (scaf8)
Spliceosome [BR:
sjo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
128375703 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
128375703
NCBI-ProteinID:
XP_053192083
LinkDB
All DBs
Position
16:complement(20445232..20469413)
Genome browser
AA seq
1411 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIMTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIPPPSVTPVMPSSAAPVNNTTPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERGEESKKDSSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQHQQKAMSIEGQDSIFGQENSVASAQGSSQSQLPDPE
NKLDDSIDNQQQDMDLDEGPDGMEEEIFEAEEKKTVSTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIG
SKIIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGIIDQETVNDEWE
AAKNAEPAKEVSSQQVSAETTAASNTQNETYNQQVTMMPVQLPVAQAVSSAVGLVPPAFP
VTMGIPPPGYGPPPPFIRAGFNTSQPPPGFMQAAQTAAMASATSLQPSVASGQEAVKESP
FSAMIPPTSIPGSFMPSAIPGAGVFNPVGMQTQQAGNEKMPQSADGMDAAAELTLQGMQN
AVRSGMGLLGMHPTASLTHPLHQSGLTGQRMPGLLPMDVRPNLLQPGAAARFPLLMQQSP
AQQAAVLLDSSLQAQARARAPFSQLDPFNRAPNLTNENVSKTEEESSSGADEGKDQDYRF
PPMEKQSTGLLRTPPPEQREALGGGAGGRPALLQTPGSQPARTSLLGRLQALAGFTPDNR
WSQTRGDFDERDSMRGGPQAPAGPKGFQEERSTAGQNYPNRFDNRPGTAGGAAGPAVNAG
AVGGPQAWNRSGGGATAPFDSELHQDLDERRRPWDRQRDRDERDFDFRRDMNGNRHSRER
ERERERDRERDRERGRDRTREHERDRDREKERDRERERERGGWTPLLPLPTPLLPTPSLN
PNLSLNQGKMLAPLKLNPQMQARFQSPLLPQAQAKPPLLGLNQPLPQVQIKSPPPSQNQE
AVPEPQPETPTLSETPQAQSPPSAQSPSDSKSQSLLPEAFTETQSSPQLETPPTESPSLP
AAQSPSKTITSPDTETPSQASPLVEASSQDSPVAFTQAASPPEETTHSLEEQESPQEEEE
EESQENASSPQPLWVNGSGMDNSTVSEPTPEASPEPTPDPSSDSLLPESEAEQQQEQQLA
SPKDVDNEQSEPMEEAASQPVVDTVTDTEGT
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagcctttaacaacgagctgtactcgttgaatgagtacaagccgccc
atctccaaggccaagatgacccagatcacaaagtctggaatcaaggctataaaattctac
aagcatgttgtccagagtgtggagaaattcatacaaaagtgcaaaccagaatacaaggtc
ccaggcctgtacgtcatcgactccattgtcagacagtcacgacaccagtttggcacagag
aaggatgtttttgccccacgcttcagcaagaatatcatcatgacgttccagcacctctac
cgctgcccctcagatgataagagtaagatagtgcgagtcttgaatctgtggcagaagaat
gctgtcttcaagagtgacatcatacagcctctgttggacatggctgcagggattcctcca
cctagcgtcacccccgtcatgcccagcagcgctgccccagtcaataacactacacctggc
acaccggcgaccccggccaccccagctaacatagtccagggtctgcctgactgggcttcc
cagattaccaacacagacactgtggctgctgtggcacagatcctacagagtccccaggga
caacagcttcagcagctggtacagagtctgcagatgcagcagcagaagcctcagccatcc
ctgctgcaggccttggacgctggcctggtggttcaattgcaagctctgacagctcagctt
actgcagctgctactgccaacagcctcaaccccctggaacagagggtctcctcttttaat
aagaaacttttgggtccgtttgactttgggaatgattctgaacgtggtgaagaatctaaa
aaggactcctcatcgtctcagctgcccatggtgtcagagcccataaacagctccttattc
caccagctagctgagcagctacaacagcagaacctagagcagtttcaaaagcaactgctg
gagcaccagcagcaccagcagaaggctatgagcatagaagggcaagattctatctttgga
caagagaactctgttgcaagcgctcagggcagcagccagtcacagcttcctgaccctgag
aacaagctggatgactccatagacaaccaacagcaggacatggatctggatgagggtcca
gatggaatggaggaggagatctttgaggcggaggagaagaaaactgtcagcacacgctcc
agaacacgctctagatcacgctccagatctcccaaaaggagaaggtccaggtcccgctcc
ggctctcggaaacgtaagcaccgtaagcggtcacgctcacgctccagagatcgcaagagg
aagtcttcacgatcatactcaagtgaaagacgcgcccgagagcgagagaaggaacggcag
aagaaaggactgcctccaatacgatcaaagactctaagtgtgtgcagtacaacactttgg
gtgggccaagtggacaaaaaggcaactcagcaagacctcaccaacctatttgaagagttt
ggccagatagagtctataaatatgatcccccccagaggctgtgcctacatctgtatggtc
cacagacaggatgcgtaccgcgcccgccagaagctaagcactggctcctttaaaattggc
tccaagatcatcaagatcgcatgggctctaaacaagggggtaaagcaggagtacaagcag
ttttgggatgttgaccttggtgtcacctacataccttgggagaaagtgaaactggatgac
ctggatgactttgctgaaggaggaatcattgaccaggagaccgtcaacgatgagtgggaa
gcagccaagaatgctgagccagctaaggaggtttcaagccagcaagtaagcgctgagact
acagcagcatccaacacccagaatgagacgtataaccagcaggtcaccatgatgcctgtg
cagctgccagtggcccaggctgtttccagtgcagtgggtttggtgcctcctgccttccct
gtcaccatgggcatacctccaccaggctacgggccaccaccacccttcataagagctggt
ttcaacacctcacagcctcctccaggttttatgcaagcagcacaaactgcagccatggct
tcagcaacttctttgcaaccttcagtggcatccggccaggaagctgtcaaggaatcacca
ttcagtgctatgatccctccgacgagtatccctggcagcttcatgccctcagctatccct
ggagccggtgtgtttaacccagtcggaatgcaaactcagcaggccggcaatgagaaaatg
ccacagtctgctgatggtatggatgctgctgcagagcttacactacaaggcatgcagaat
gcagtacgcagcggaatgggtcttcttggcatgcaccccactgcctccctcacccaccca
ctgcaccagtctggtctgactggtcagagaatgcctggactgttgccaatggatgtgcgt
cctaacctcctccagcctggagctgccgcacgtttcccactcttaatgcagcagagcccc
gcccagcaggctgctgtacttctcgacagctccctccaagctcaagcccgcgccagggcc
cccttttcccagttagaccccttcaacagagcccccaaccttaccaatgaaaatgtctct
aagacagaagaggagtcttcttctggtgctgatgagggcaaagaccaagactaccgcttc
cccccaatggaaaaacagagcacaggcctgctgaggacgcctccgccagagcaaagggag
gcccttggaggtggtgcaggaggcaggcctgccttgctccaaaccccaggatctcagccc
gccagaaccagtctgctgggacgtctccaggctcttgcaggctttactcccgataaccgc
tggagccagaccagaggggactttgatgagcgagacagcatgcgaggaggtcctcaggct
ccagcaggtccaaaaggcttccaggaggagcgctccacagcagggcagaactatcccaac
cgctttgataaccgtcctgggacagcaggaggagcagctgggcctgctgtaaatgccgga
gctgttggggggccgcaggcctggaatcgtagtggtggtggtgccacagcaccttttgac
agtgaactacatcaagacctagatgaacgaagacgcccatgggacaggcagagagacaga
gacgaaagagattttgacttcaggagggacatgaatggaaaccgtcacagccgtgagaga
gagcgtgagagggaacgcgacagggagagagacagggagcgaggccgagatcgtactaga
gagcacgaacgcgacagagaccgcgagaaagagagagaccgcgagagggagcgtgaacgc
gggggctggacacctcttctccctctacccacacctctgcttccaactccatcgcttaat
cccaacctgtccctgaaccaaggcaaaatgctcgccccgctcaaattgaaccctcagatg
caggcacgattccagtccccacttctgccccaagctcaggccaaacctcctctcttaggt
ctgaatcagccgctgccgcaggttcagattaagtctccacctccatcacagaaccaagaa
gctgtgcccgagccccagccagaaacccccactctgtctgagacacctcaggcacagtca
cccccctcagcccaatccccatctgacagcaagagtcagagcctgttgcctgaggctttc
actgagacccagtcatcaccacaactcgagaccccacccacagagtcaccgtccctgccc
gctgcccagtccccctccaagaccatcacttccccagacactgagaccccaagccaagcc
tcaccacttgttgaggcttcatcccaggactcacctgtggccttcacacaagctgccagc
ccccctgaagagactactcactctctggaggagcaggagagcccacaggaggaggaagag
gaggaatcacaagagaacgcctcctctccccaacctctctgggtcaatggatctgggatg
gacaatagcactgtgtctgagcccacacccgaggcctctcctgagcccactccagacccc
tcctccgactccctgctccctgaaagtgaagcagagcagcagcaggagcagcagcttgcc
tctcctaaggacgtagacaatgaacagagtgagcccatggaggaagctgcaagtcagcca
gtggtagacactgtcacagacactgaggggacataa
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