Scomber japonicus (chub mackerel): 128375911
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Entry
128375911 CDS
T09718
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo02010
ABC transporters
sjo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
128375911
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128375911
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sjo02000
]
128375911
Transporters [BR:
sjo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
128375911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
DUF7447
Motif
Other DBs
NCBI-GeneID:
128375911
NCBI-ProteinID:
XP_053192303
LinkDB
All DBs
Position
2:complement(27686106..27727473)
Genome browser
AA seq
2271 aa
AA seq
DB search
MAVSTQLGLLLWKNFTYRRRQTIQLLIEIIWPLFIFFILISVRIHYPPYEQHECHFPNKA
LPSAGTLPWVQGIICNANNPCFRNPTPGETPGVVGNFNDSIISRLFIDAKKILLYTQNDK
SYEGYKGMLRALRKLQKNTASFKLKDFLRDDETLSHFLHHNASLPHHAMKHIVEADVNLE
KVLTKGFGFHLRDLCNTTPLEEFVHIADRNVSHLTQEIICNSSKDWLDKAQSHFLSNLDF
FKPIRKDVRSDPKVVQEVSAATDNLLESLGALAVELSNMKSWKDMRKEILYLTANATGSP
NQMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGNDSDSEPLSTYDNTSTPYC
NNMMRSLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIHEVNKTFQELGVLRDLGGM
WEEMRPKIWNFMENSEEMDMVRTLLQNNASAAFFNAQLSDTEWRVSDVSNFLSKISKDKR
PARSAYTWREVFNETDQAIQTISRFMECVNLDKLEPVANEERLVNKSMGLLDNQKFWAGI
VFPDIAHSNSTDLPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFSY
LQDVIEQGIIRAVTGTKEKTGIYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAII
IKGVVYEKEARLKETMRIMGLNNGILWLSWFISSLIPLLISAGLLVMLLKMGNLLPYSDP
GVVFLFLGSFGVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGA
KIVVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEEDSYNLTTSICLMLFDAVLY
GIMTWYIEAVFPGQYGIPRAWYFPFTRSYWCGEKENKNISTPLSKKGNADAVCIEEEPNH
IDPGVYIENLVKVYSHGNKLAVDGLSLRFYEGQITSFLGHNGAGKTTTMSILTGLFPPTS
GTAYILGKDIRTELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYACLKGLPEEKVKAEMEQ
IVNDVGLPHKRQSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL
LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDY
DLTLQSCRNSASTVSYSKKTEKEDSISESSSDAGLGSEPESETTTIDVSLISNVIFKHVP
EARMVEDLGHELTYILPYQSAKDGAFVELFHELDDRLTDLGISSYGISDTTLEEIFLKVA
EDSGVDSVELSDGVVPTRIRRHHAFGDHQSCLKPFTEDDFDFNDSEGDPESRETDWLSGT
DGKGSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPF
GKYPSLALHPSMYGEQFSFISNDLPEDPHINKLLGALTDKPGFGTRCMEGEPIPDTPCTA
VEDEWSVPQVSQSMKDIFDKGNWSMENPSPLCECSCQGRKRMLPECPAGAGGLPPPQMKT
SDKDTLQNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARNSKFLSEKDDI
DDAITQLRMRFRLERGTAADRFFLSLSSFVQGLDTKNNVKIWFNNKGWHSIGSFLNVMNN
GILRASLPADKDPSKFGITAHNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPAS
FVVFLIQERVNKAKHMQFISGVQPFLYWLANFVWDMCNYIVPATLVIIIFVCFQQDAYVS
STNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELF
GSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGK
NLFAMAIEGVIFFSITVLIQYHFFFKARSSTSHLKPIGEEDEDVARERQRILSGGGQSDI
LELRQLTKIYKRKQKPAVDRLCVGIPRGECFGLLGVNGAGKTSTFKMLTGDSMVTSGEAY
LAGKSVTTEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVAEWGIRK
LALAKYVDKSAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALWNAILSII
KEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPD
LQPVMDFIERELPGSTLKEKHRNMLQYQLPSSLTSLARIFSLLSKNKEELSIEDYSVSQT
TLDQVFVNFAKDQSDEDHLKDVHLNKRDAVVVDISKMNSFLMDNKTRESCV
NT seq
6816 nt
NT seq
+upstream
nt +downstream
nt
atggcagtctccactcaactgggtttactgctttggaagaacttcacctaccgacggaga
cagactatccagctgctgattgagattatctggcctttgttcattttcttcatcctaatc
tcagtccgaatacattatccaccctacgagcaacatgaatgccatttccctaacaaagcc
ttgccctcagcgggcactctgccctgggtacaaggaatcatctgtaacgctaacaacccc
tgcttccgcaaccctacccctggagaaactcctggggtggtgggaaacttcaacgattct
ataatctcccgtctgttcattgatgccaagaaaatcctgctctacactcagaatgataag
agctacgagggctacaaaggaatgctgagggccctcaggaagctgcagaagaacactgcc
agtttcaagctgaaagactttttaagagacgatgaaaccctttcacatttcctgcatcac
aacgcctcacttcctcatcacgctatgaagcacatagtcgaggctgacgtcaatctggag
aaggtgctgactaaaggtttcggcttccatcttagagacctctgtaataccacacccctg
gaagagttcgtccatatcgccgaccgcaacgtctcccatctgacgcaggaaatcatctgc
aattcatccaaagattggctggacaaggcccagagccactttctctccaacttggacttc
ttcaaacctattcggaaggatgtgaggtcggaccctaaagttgttcaggaagtctcagct
gcaaccgacaatcttctggagagcctgggagcactggccgtggagctttccaatatgaag
agttggaaggatatgcgaaaagagatcctgtatcttactgcaaatgccacaggctctcca
aaccaaatgtaccaagctgtgtcacgtatcgtctgtggacacccagagggaggcggcctt
aaaatcaaatctcttaactggtatgaagacaacaactacaaggccctgttcggaaaccat
ggtaacgacagtgacagcgaacctctctccacttacgacaacacttcaactccctattgt
aacaacatgatgcggagcctggagtccagccccatttccaggatgatctggagagctctg
aaacctctgctcatgggaaagatcctgtatactcctgatactccagcaacacagaggatc
atccatgaggtcaataagaccttccaggagctcggcgtgctgagggaccttggtgggatg
tgggaggagatgaggcccaaaatttggaacttcatggagaatagcgaggaaatggacatg
gtcaggaccctgctccaaaataatgccagtgcagcattcttcaacgcccagctcagtgac
actgagtggcgggtgtcagatgtatcaaacttcctatccaagatctcaaaggacaaaaga
cctgcaagatcagcctatacctggagagaggtcttcaatgaaacagaccaggccatccag
acgatctcacgcttcatggagtgtgtgaacctggacaagctggaaccagtagctaatgag
gagcgattggtcaacaagtctatgggtcttcttgacaaccagaagttctgggcaggaatt
gtgtttcccgatatcgcccatagcaacagcactgacctgcctcccaatgtcaactacaaa
atccgcatggacattgataatgtggagaggactaacaagattaaagatggttattgggac
cctggccccagggcagacccctttgaggaccttcggtacatctggggtgggttttcctac
ctgcaggacgtgattgaacaaggaatcatcagagctgtcactggcaccaaggaaaagaca
ggcatctacattcagcagatgccctatccttgctatgttgatgacattttcctgcgggtg
atgagtcgatcaatgcctctcttcatgactttggcatggatgtactcagtggccatcatc
atcaagggtgtggtgtatgagaaggaagcgcgactcaaagagaccatgaggatcatggga
ctgaataacggcatcctgtggctcagctggttcattagcagtttaatccctctgctgatc
agcgctggcttattggtgatgttattgaagatgggaaacctgctgccttacagtgaccca
ggcgtggtgtttctttttctgggatcctttggcgtagtgaccatcatgcagtgttttctc
atcagcaccttgttctctcgtgccaacttggcagctgcctgcggtgggatcatctacttc
actctttacctgccttacgttctgtgtgtcgcctggcaagactacgtgggctttggagca
aaaatcgttgtgagtctgctgtcacctgtagcttttggttttggctgtgagtactttgcc
ctgtttgaggagcaaggagtgggaatccagtggtccaatctgctggctagccctctggag
gaggacagctacaatctgaccacatctatctgcctgatgctgtttgatgccgttctctat
ggaataatgacatggtacattgaagctgttttccctggtcagtatgggatccccagggct
tggtatttcccattcactaggtcatactggtgtggagagaaagaaaacaagaacatctca
actcccctgtcaaagaagggcaacgctgatgctgtgtgtattgaggaggagccaaaccat
attgatccaggtgtttacatcgagaatctggtgaaggtctacagccatggaaacaagctg
gctgtggatggactgtccctgagattctatgaaggacagatcacctccttccttggccac
aatggagctggcaagaccacaactatgtcaatccttacagggttgttcccacccacatct
ggtacagcctacatccttggcaaggacatccgcactgaactcagcaccatacggcagaat
ctgggtgtctgtccccagcacaatgtacttttcagcatgctgacagtggaggaacacatc
tggttctacgcctgtctgaagggactgcctgaggagaaggtgaaggctgagatggagcaa
attgtgaatgatgttggactgccgcataaaagacaatcacgcaccagcacactgtctgga
gggatgcagaggaagctctcagtagccctggcttttgttgggggctcaaaggttgtcatc
ttggatgaacccactgctggtgttgatccctacgctcgcaggggcatctgggacctgctg
ctcaaatacagacaaggccgtaccatcatcctgtccactcatcacatggacgaggcagac
atcctgggtgaccgcattgccatcatttcccatggcaaactgtgctgcgtaggctcttcg
ctcttcttgaagacccaactggggacaggctactacctgaccctggtcaagagagactat
gacttgacacttcagtcctgcaggaattctgcaagcaccgtctcctacagcaagaaaaca
gagaaggaggacagtatatcagagagcagttcagatgcaggtcttggtagcgaaccagag
agtgaaaccaccacgattgatgtgtccctcatctccaatgtgattttcaagcatgtccca
gaggctcgcatggtggaggatctcgggcacgaactcacatatatcttaccctaccagtca
gctaaagatggagcctttgtagagctcttccatgagcttgacgatcgcctgaccgacctg
ggaatatcaagctatggaatatctgataccaccctggaggagattttcctgaaagtggct
gaggacagtggagtggattctgttgagctttcagatggagtcgtgccgacaaggattcgt
cgccatcatgcatttggagaccaccagagctgcctgaagcccttcacagaggatgacttt
gatttcaacgattctgaaggtgacccagaatcccgtgagactgactggctcagtggaaca
gatggtaaaggttcgtaccaggtcaaaggctggagtctgaagagacagcaatttgtggca
ttactttggaaacgattcctctatgctcggcgctccaggaaaggcttctttgctcagatt
gttcttccagcagtgtttgtctgcattgcccttgtgttcagcctgattgtccctccattt
ggaaagtaccccagtctggccctgcatccaagcatgtatggcgagcagttttccttcatc
agtaatgacttgcctgaggacccgcacatcaacaaactactgggagctctgacagataaa
cctggatttggaacacgctgcatggaaggagaacccatacctgacactccctgcacagca
gtagaggatgagtggtcagtcccgcaagtatctcaaagtatgaaggacattttcgacaaa
ggtaattggtccatggagaatccctctcccctgtgtgaatgcagctgccaagggcgcaaa
aggatgttgccagagtgtcctgctggtgctgggggacttccgccaccacagatgaagacc
agtgacaaagacactcttcaaaatttgactggcagaaacatctcagactatctggttaag
acctacgctcagattatcggcaagagcctgaagaacaagatttgggtcaatgagttcaga
tacggtggattctcgctgggtgccaggaattctaagtttctgtctgaaaaagacgacatt
gatgatgcaattactcagctgcggatgcgcttccgtctggagagaggaactgcagcagat
cgtttctttctcagtctctccagtttcgtccaaggattggacactaagaataacgtcaag
atctggttcaacaacaagggttggcacagcatcggctctttccttaatgtgatgaacaat
ggcatcctgcgggcaagtctgccagccgacaaagacccctcaaagtttggcattactgcc
cacaatcatccgctcaacctcaccaaggagcagctgtcacaagtcgctttgatgactaca
tcagtggatgtgctggtatccatctgcgtgatctttgccatgtcctttgtccctgccagt
tttgttgttttcctcattcaggagagagtgaacaaggccaaacacatgcagtttatcagc
ggagtgcagcccttcctctactggctggccaactttgtctgggacatgtgtaactacatc
gttccagccacgctggtcatcattatttttgtgtgtttccaacaagacgcttacgtctcc
tccaccaatctgcctgtgctggcgctgctgctgttgctttatggatggtctatcaccccg
ctgatgtatccagcctcatttttctttaagatcccaagcacagcttacgtagttctgacc
agcgtcaacatattgataggaatcaatggcagtgtctccacattcgtcctggagctgttt
ggaagcaatgagatcggtggcatcaacgacatcctgaagaacgttttcctcatcttccct
cacttctgtctgggcagaggactgatcgatatggtgaagaatcaggcaatggcagatgct
ttggagagatttggtgaaaaccggttccgttctcctctggcctgggacatggtgggaaag
aacctctttgcaatggccattgagggtgtcatcttcttctctatcacagtcctcattcag
taccacttcttcttcaaggccaggtcatctaccagtcatctgaagcctataggagaagaa
gatgaggatgtggccagagagcgacagaggatccttagcggaggtggacaatctgacatc
ctggagcttagacagctcactaagatttacaaacggaaacagaagccggcagtggaccgg
ctatgtgttggcatcccccgcggcgagtgctttggcttgcttggtgtaaatggagctggg
aaaaccagcacctttaaaatgcttacaggagactcaatggtcaccagtggagaagcctac
ctggctggcaagagtgtaactacagagatagatgaggtgcatcagaacatgggctactgt
ccccagtttgatgccatcaacgacctgttgactggcagagagcaccttgagttttacgcc
atcctgagaggagtgcctgagaaggaagtctgtgaggtggcagagtggggcatccggaag
ctggccctagccaaatatgtcgacaaatcagcaggcagctacagcggaggaaacatgaga
aaactgtccactgccattgctctcataggaggaccacctgttgtgtttctggatgaacct
acgacaggtatggaccctaaagcacgtcgtgccctgtggaatgccatactgagcatcatc
aaagagggacgatctgtagtcctgacctctcacagcatggaggagtgtgaagcactttgt
accagaatggccatcatggtcaacggcaggttccgctgtctgggtagtgtgcaacacctc
aaaaacaggtttggtgatggctacaccatcatcctgcgggtggcggggccggacccagac
ctccaaccggtgatggacttcattgagcgggagctgccaggcagcacactgaaggagaaa
caccgtaacatgctgcagtaccagctgccctcctcccttacctccctagcccgcatcttc
tccctgctctccaagaacaaggaggagctcagcatagaagactattccgtctcgcagacc
actctagaccaagtgtttgtaaattttgccaaggaccaaagtgacgaggaccatttgaaa
gacgtccatctgaataagcgagatgctgtggtagtggacatttcaaagatgaactctttc
ctcatggacaacaagaccagggagagctgcgtgtga
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integrated database retrieval system
