Scomber japonicus (chub mackerel): 128375915
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Entry
128375915 CDS
T09718
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04137
Mitophagy - animal
sjo04140
Autophagy - animal
sjo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128375915 (hif1aa)
04137 Mitophagy - animal
128375915 (hif1aa)
04148 Efferocytosis
128375915 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128375915 (hif1aa)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
128375915 (hif1aa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
PAS_2
Motif
Other DBs
NCBI-GeneID:
128375915
NCBI-ProteinID:
XP_053192307
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Position
16:complement(16534387..16551195)
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AA seq
763 aa
AA seq
DB search
MDTGIVPEKKRVSSERRKEKSRDAARCRRGKESEVFYELAQQLPLPHSVSSSLDKASIMR
LIISYLRMRKLLSTDEPVAEEETELDIQLNSSYLKALEGFLMVLSEDGDMIYLSENVNKC
LGLAQFDLTGHSVFDFIHPCDQEELREMLVHRTGSKKTKEQNTERSFFLRMKCTLTSRGR
TVNVKSATWKVLHCSGHVRLYDSHIEQPPNGHKEPPVPYLVLICDPIPHPSNIEVPLDTK
TFLSRHTMDMKFTYCDERITELMGYDPDDLLNRSVYEYYHALDSDHLTKTHHNLFAKGQV
TTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLIMSLEQTEDM
KSVKEEQQEEEKAEVEISEPDMSPVLLKDDEEKTPEQDMVKLFTQVADVKPLVSLYDQLK
EEPEALTLLAPAPGDTIISLDFSCPDSEIQLLENVPLYNDVMLPSTNDKLDLPLSPLPPS
EPLHVTTTNSENLKTESFAPTPSTTSTSQSSSETDSPLDFCFPMDSDMSSDFKLDLVEKL
FAIDPQPKTPFTKQAMEDLDLEMLAPYIPMDDDFQLRSLTPDETLSCGVKSLETCPLRSL
ESSPLHVTQEVNSYPNSPFSSPGSQAASPAPPEPVNAPHPATIIAKRTPQLDKEVSLRTL
AAQNAQRKRKLGDIRELFGQGSLPQEQLEQGKKLKSSESGTTRTILLLPSDMASRLLGTA
EGTSSLFTLPQLTRYDCEVNAPLQGRQYLLQGEELLRALDHVN
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggaattgtacccgaaaagaaaagagtgagctcagagcggaggaaggagaag
tcaagagatgctgcgcgatgccggcgcgggaaggagtccgaggtgttctacgaactggcc
cagcagctgccgctgccccacagcgtcagctccagcctggacaaggcctccatcatgaga
ctcatcatcagctacctgcgcatgagaaaacttctaagtacggatgagccagtggcagag
gaggaaacagagctggatatccaactaaacagctcctacctaaaggctctggaaggcttt
ctcatggtgctttcggaagacggagatatgatctatctctctgagaatgtcaacaagtgc
ctggggctggcacagtttgacctgactggacacagcgtgttcgacttcatacatccctgt
gaccaggaggagctgagggagatgctggtccacagaacaggctccaaaaagaccaaggaa
caaaacacagagcgcagcttctttctccgaatgaagtgcactctcacaagcagaggccgc
actgtcaacgtgaaatcggccacatggaaagtgctccactgctcaggtcatgtacgttta
tatgacagccacatcgagcagcctcccaatggccacaaggagccacctgtcccgtacctg
gttttgatctgtgaccccatcccacacccctccaacattgaagtccctctggataccaag
acctttctcagccgccacacaatggacatgaagttcacatattgtgacgagaggatcact
gagctgatgggttatgatccagatgacctgctgaatcgttcagtgtatgagtactaccat
gctctggactcggaccatctcaccaagactcaccacaacttgtttgcaaagggtcaggtc
accacaggccagtacaggatgctggccaagagaggaggttttgtgtgggtggaaacccag
gccactgtcatctacaacaacaagaactctcagccacagtgtgttgtctgtgtcaacttt
gtgcttagtggcatccaggaggagaaactgatcatgtctctggaacagaccgaggacatg
aagtcggtgaaggaggagcagcaggaagaggaaaaggctgaggtcgagatcagtgagcca
gacatgtcaccagtcctgctgaaggacgacgaggagaagaccccagagcaggacatggtc
aagctgttcacccaggtggctgatgtcaagccactggttagcctgtatgatcagctgaag
gaggagcctgaggccctaaccctgctggccccagcccctggagacacaatcatctccctg
gacttcagctgccctgattcagagatacaactgctggagaatgtccctctctacaatgat
gtaatgcttccctccaccaatgacaagttggatctgcctctttcccctctgccgcccagc
gagcctctccatgtcaccaccaccaactctgagaacttgaaaactgagagctttgctccc
acaccgtccaccacatcaaccagccagagctcctcagagactgacagcccattggacttt
tgtttcccaatggactctgatatgagctcagatttcaaactagacttggtggagaagctg
tttgcaattgacccacaacccaaaactcccttcaccaaacaggcaatggaagatctggat
ctggagatgttggcaccctacatccccatggatgatgacttccagctgcgtagtttgacc
ccagatgagaccctctcttgtggagtaaaatctctggagacctgtcctctccgctccctg
gagagctcccctctccatgtcacgcaggaagtcaacagctatcccaactcccccttcagc
tcaccaggtagtcaggctgcttcaccagcaccacccgagccagtaaatgcccctcatcct
gccaccatcatcgctaagaggaccccacagttggacaaagaagtctctctcaggaccctg
gcagctcagaacgcacagcgcaaaaggaaactgggcgacataagggaactttttggacag
ggatctttgccccaagagcagctggaacagggcaaaaaactgaagtcctcagaatcagga
acaaccaggaccatacttctgttgccttcagatatggcaagtcgtctgctgggcacagca
gagggcaccagttcactcttcacgctgccgcagctcacccgctatgactgcgaggtcaac
gcccctttacagggtcgccagtacctgctgcagggggaggagctgctgcgtgctctggac
catgtcaactga
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