Scomber japonicus (chub mackerel): 128376719
Help
Entry
128376719 CDS
T09718
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sjo03041
]
128376719 (ddx1)
03016 Transfer RNA biogenesis [BR:
sjo03016
]
128376719 (ddx1)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128376719 (ddx1)
Spliceosome [BR:
sjo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128376719 (ddx1)
Transfer RNA biogenesis [BR:
sjo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128376719 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
DUF4882
Motif
Other DBs
NCBI-GeneID:
128376719
NCBI-ProteinID:
XP_053192505
LinkDB
All DBs
Position
17:complement(15859224..15866393)
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLSDQKEGKKGRAAIKTGGAIFNSWQMNPYDRSSAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDLDKSQISFSKNGNDLGLAFEIPKNLQNQAFFASCVLKNAELKF
NFGGEDFKHQPKSGFVAFNQAPDGHSVKSSQTGSAKVSQVKPTSNAPKALIIEPSKELAE
QTLNNVKQFKKYVDNPKLRELLVIGGVAAKEQLAALEQGIDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDHMWERLGKNHIRTDEVHAKDNTRPGAN
SAEMWSEAIKVLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKTHQL
SCVCLHGDRKPNERKNNLERFKRKEVRHLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCANRGRGCYNTRLKEDGGCTIWYNEKELLS
DIEEHLKCTITQCEPDIKVPVDEFDGKVSYGQRRALGGGNYKGHVDVLAPTVRELANLER
EAQTSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaaatgggggttatgcctgaaatcgcgcaggctgtggaggagatg
gactggctgctacctactgacatccaggcagagtccattcccctcattcttggtggagga
gatgtacttatggcagctgaaactggtagcggaaaaacaggagcattcagtatccctgtg
atccagattgtgtatgagaccctgtcggaccagaaggagggcaagaagggcagagcagcc
atcaaaactggaggagctatcttcaacagctggcagatgaatccttatgaccgcagttca
gcctttgcgattggtccggatggactgtgctgccagagcagagagtttaaagagtggcat
ggctgtcgctctacaaaaggtgtcaccaaagggaagtactactatgaggtgacctgccat
gaccaggggctgtgtcgtgttggctggtccacaagtcaggcagcccttgacttgggaacc
gataagtatgggtttggttttggtgggactggaaagaaatcacacaataagcagtttgac
agctatggcgaggagtttaccatgcatgacactattggatgctacctggatcttgacaag
agccaaatttccttctccaaaaatggtaatgacctgggtttggcttttgagattcctaaa
aatctgcagaatcaggccttctttgcctcctgtgtgctcaagaatgcagagctgaagttt
aactttggaggagaagactttaaacatcaacctaagagtgggtttgtcgccttcaaccag
gcaccagacggtcactcagtcaaatcttctcagacaggcagcgccaaagtgagtcaggtg
aaaccaacatccaatgcacccaaagccctgatcatcgagccttcaaaagaactggctgaa
cagaccctcaacaatgtcaagcaatttaagaaatatgtggataatcccaaactcagggaa
ctactggtaattggcggtgtggctgccaaagagcagctggctgctctggaacaagggatc
gacattgtggtgggaacacctggcagactggacgaccttatatccactgggaaactcagc
ctatcccaagtccgctttctggtcctggatgagtgtgatggcctcctatcagcaggctat
actgacttcatcaacaggatccataaccaaatcccacaggtcacttctgatggcaagaga
ctgcaggtgattgtgtgctcagccacgctgcattcgtttgacgtgaagaagttgtctgag
cgcatcatgcactttcccacatgggtggacctgaagggcgaggactctgttcccgagact
gtccaccatgtggtggtgcctgtcaaccccaagactgatcacatgtgggagcggctgggc
aagaaccacatcaggactgacgaagtccatgccaaagataacaccagaccaggagccaat
tcagcagaaatgtggtcagaagctattaaggtactgaagggcgagtacacagtgagggcc
atcaaagagcacaaaatggaccaggccatcatcttctgtcgcaccaagattgactgtgac
aacatggagcagtacttcattcagcagggaggaggtccagacagtaaaacccaccagttg
tcctgtgtttgtctccatggtgatcgtaagcccaacgagaggaaaaataacttggagcgc
tttaagagaaaagaagtgagacacctgatctgcacagatgtagctgccagagggattgac
atccacggagttccttatgtgattaacgtcaccctgccagatgagaagcagaactatgtc
catcgtattggcagagtgggcagagcagaaagaatgggtctggccatctccttggttgcc
atggagaaggagaaggtgtggtatcacgtttgtgcaaaccgaggccgaggatgctacaac
acccgactgaaggaggatggcggttgcaccatctggtacaatgagaaagagcttctgtca
gatattgaggaacatctaaagtgcaccatcacccagtgtgagcctgacatcaaagtacct
gtggatgagtttgatggaaaggtctcttacggtcagcgcagagcattgggaggtggtaac
tacaagggtcacgtggatgtgctggccccgacagtccgtgagctggctaacctggagaga
gaggcccaaacttccttcctccatctgggatacatgccaaaccagctgttcagggccttc
tga
DBGET
integrated database retrieval system
