Scomber japonicus (chub mackerel): 128376939
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Entry
128376939 CDS
T09718
Symbol
stxbp5a
Name
(RefSeq) syntaxin-binding protein 5a isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128376939 (stxbp5a)
Membrane trafficking [BR:
sjo04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
128376939 (stxbp5a)
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
128376939 (stxbp5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
WD40
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_Prp19
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Lgl_C
EIF3I
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
Synaptobrevin
Beta-prop_VPS8
CFAP43_N
VPS8_N
WD40_like
Motif
Other DBs
NCBI-GeneID:
128376939
NCBI-ProteinID:
XP_053192770
LinkDB
All DBs
Position
17:complement(18240900..18337361)
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AA seq
1141 aa
AA seq
DB search
MKKFNIRKVLDGLKEASSSTPSVHVGPQENHLIQETLQSDHFQLCKTVRHGFPYQPSSMA
FDPVQKILAIGTQRGALRLFGRPGVECYCQHESGAAVIQLQFLINEGALVSALADDTVHL
WNLRQKRPAILHSLKFSRERITFCHLPFQSKWLYIGTERGNIHIVNVESFMLSGYVIMWN
KAIELSSKAHPGPVVHISDNPMDEGKLIIGFESGIVVLWDLKSKKADYRYTYDEAIHSVA
WHHEGKQFICSHSDGTLTIWNVRGQGKPIQTITPHGKQPKDGKKPEPCKPILKVEYKTTR
NGEPFIILSGGLSYDTVGRRPCLTVMHGKSTAVLEMDYPIVDFLTLCETPYPNDFQEPYA
VVVLLEKDLVVIDLAQNGYPIFENPYPLTIHESPVTCCEYFADCPVDLIPALYSVGSRQK
RQGYSKKEWPISGGNWGQGTQSYPEIIITGHADGTVKFWDASAITLQVLYKLKTAKVFDR
NRSKEDKGSMEVSDEDPFAIQIMAWCPESRMLCVAGVSANVIIYRFSKLEVTTEVVQLLE
VRMQYELNDIESPDGGGGEQTSALPTPGASPQTSGPPSHPSTSSNNSDGGNMPCLKVRST
PLKQSPGYQVDLVVQLVWVSGEPPQQITTLALNSSYGLVVFGNSNGLAVVDYIQKTVVLN
LGTVELYGSNDPYQRQPRSPRKTRQPSGGLCDINEGSATSEDRCKSPTSVLMSNSNLQQF
YNGGGRGAKMSRKLSLPTELKPDLVLLSVCPPRGANPLDHRDNSFSRSRSSSVTSIDKEA
KEAITSFHFSETFARKGDSTLTPCLYVGTSLGTVLTLAITLPPAGEQRQLQPVIISPTGM
LVRLKGSHLQMAFLDSTGSLVPPAFEPWYEPNVTADGEEREKVRKRRPVSVSPSTSQDLN
ENQYAVVCSEKQAKVISLPSQTCIYKHSITETSFILRADVVQMSQGVSLACFCANGHIMT
LSLPGLRPLMDVNYLPLTDMRIARTFCFTNLGQAMYLCSPTEIQRITYSQDTCENLQEML
GELFTPVETPEAPNRGFFKGLFGGGAQSLDREELFGEVAAGKASRSLAQHIPGPGGIEGM
KGAASGVVGDLARARIALDERGQKLGELDERTAAMMASADSFSKHAHEMMLKCKDKKWYQ
F
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagttcaacatcaggaaggtgctggacggcttgaaggaggcgtcctcctccacc
ccgtctgtccatgtggggccacaggagaaccatctgatccaggagacccttcagtccgac
catttccagctctgcaagactgtccgtcatggcttcccatatcagccatcatccatggct
ttcgacccggtgcagaagatactggccattggcacccagagaggagctctcagattgttt
ggtcgtccaggtgtggagtgttactgtcagcatgagagtggagcggctgtcatccagctt
cagtttctcatcaacgagggagcacttgtgagtgctctggctgatgacactgtccacctg
tggaacctgaggcagaagagaccagccatcctccattccctcaagttcagcagagagaga
ataactttctgccacctgcccttccagagtaaatggttgtacatcggcacagaacgaggg
aacatccacatcgtcaacgtggagtcctttatgctctcaggctacgtcatcatgtggaac
aaagccattgaactgtcgtccaaggctcaccctggaccagttgtccacataagtgacaac
cctatggacgagggaaagcttataattggatttgagtctgggatcgtggtcctgtgggat
ctgaaatcaaagaaggccgactatcgctacacttacgatgaggcgatccactcagttgcc
tggcatcacgagggcaagcagttcatttgcagtcactcagacggaaccctgaccatatgg
aacgtcagagggcagggcaagcccatacagacaatcacccctcacggtaaacagcccaag
gacggaaagaagccagagccttgcaaacccattctcaaagtggaatacaaaaccactaga
aatggggaacccttcataatcctttctggtggtctgtcctacgacacggtgggcaggcgg
ccctgtcttacggtaatgcacgggaagagtactgctgtgctggagatggactaccctata
gtagacttcctcacactctgtgagacaccgtatcctaatgattttcaggaaccttatgct
gtggtggtccttctagaaaaggatttagtggtgatcgaccttgcacaaaatggttacccc
atattcgagaacccctatcctctgactatccatgagtctcctgtgacctgctgcgagtac
tttgccgactgccctgtggacctcatacctgcactttactctgttggctcgcggcagaaa
cgacagggctacagcaaaaaggaatggcctattagtggtggaaactggggtcaaggcaca
cagagctacccagagatcatcatcactgggcatgctgatggaactgtgaagttctgggat
gcctctgcaataacgctccaggtgctctacaagctcaaaacagccaaggtgtttgacaga
aaccggtccaaggaggacaagggcagtatggaggtgtcagatgaagacccttttgccatc
cagattatggcctggtgccctgagagcaggatgctgtgtgtggctggggtgtcagctaat
gttatcatctaccgcttcagcaagctggaagtaactactgaggtagtgcagttactagag
gtgcgaatgcagtatgagctgaatgatatagagtctccagacggtggtgggggggaacag
acatcggcgcttcccacccctggtgcctcccctcagacgagtggcccaccgtcgcacccc
tccaccagcagcaacaactctgacggaggcaacatgccctgcctcaaagtgcgcagcaca
cctctgaagcagtctccaggttaccaggtagatttggtggtccaattagtgtgggtgagt
ggagagccccctcagcagatcacaactctggcgctcaattcctcctacggccttgtggta
ttcggcaacagtaatggtctggccgtggtggactatatccagaagacagtggtgctcaac
ttggggacggtcgagctgtacggctccaatgacccctaccagagacagccccgctcacca
agaaagacacgacagccctctggaggtctgtgcgacatcaatgagggctcagcaacatca
gaggaccgctgcaagtctcctacttcagtgttgatgtcaaacagcaatctacagcaattc
tacaatggcggtggtagaggagcaaagatgtcacggaaattaagcttgcctactgagcta
aagccagacttggtcctcctgtctgtatgcccgccacggggtgccaacccattagaccac
cgggacaattctttcagtcgctcgcgctcctccagtgtcaccagcattgacaaggaagct
aaagaagccatcacttccttccacttcagtgagaccttcgcccggaagggggacagcact
ttgacaccctgcctgtatgtgggcacctccttgggcaccgtgctcactctggctatcaca
ttaccacctgctggtgaacaacggcagcttcagccagttatcatttctcctacaggcatg
ttggtacgcctgaaaggcagccacctgcagatggctttcttggactccacaggttccctg
gtgccccctgcgtttgaaccttggtatgaacccaatgttacagcagatggtgaagaaaga
gagaaggtccgcaaacgccggcccgtctcagtttccccttcaacctcccaggacctcaat
gagaaccagtatgccgtggtgtgttcagaaaaacaggccaaagtcatttccctgccctcc
cagacctgcatctataaacatagtatcacagagacttccttcatcctgcgggcagatgtg
gtgcagatgagccaaggcgtgagcctggcgtgcttctgtgctaatggccacatcatgacc
ctcagtttgccaggactgagaccgctcatggatgtaaactacctgcctttgacagacatg
cggatagcaaggacgttctgcttcaccaacttgggtcaggccatgtatctctgctccccc
actgagatccagaggatcacttacagtcaggacacctgtgagaacctgcaggagatgctg
ggtgaattatttacaccagtggagacaccggaggcacccaacagagggttcttcaagggt
ctctttgggggaggagcacagtcactggatagagaggagctatttggagaggtagcagct
ggaaaggcatcccgaagcctggcccagcacatcccaggcccgggtggcattgagggtatg
aagggggcagcctctggtgtggtgggagatctggcacgcgcccggatagcacttgatgaa
agaggccagaaactgggtgagctggatgagaggacagctgcgatgatggccagcgcagat
tccttttccaaacacgcccatgagatgatgctgaagtgcaaagacaaaaaatggtaccag
ttctga
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integrated database retrieval system
