Scomber japonicus (chub mackerel): 128377069
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Entry
128377069 CDS
T09718
Symbol
prdm1c
Name
(RefSeq) PR domain zinc finger protein 1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128377069 (prdm1c)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
128377069 (prdm1c)
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Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
zf-C2H2_4
SET
zf-C2H2_6
Zf-C2H2_ZNF451_C
zf-C2H2_jaz
zf-met
Zf-C2H2_ZNF451
C2CH-3rd_BIRD-IDD
zf-C2HE
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
128377069
NCBI-ProteinID:
XP_053192931
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Position
17:complement(19831899..19840268)
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AA seq
781 aa
AA seq
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MCGSSQGFTASSSQCSTAMLTSEGSPQSTGVIIAAMADTQDVDMTSWRETDYEEKCTYIV
KDQPLEEESENRSRTRAERSLPRNLALKRHLNSAEVLGVTSKELIPKGTRFGPLVGESYT
NETLLKDANRKYFWRVFLEGHLHHILDGLNEERSNWMRYVNPARGVEEQNLVACQSGLNI
YFYTIKPLQPGQELLVWYCPEFAKRCNYPPPGQLNIDCIEQSQAREKTTGKRGHSVSEIL
QDEPSKSLTTCPRRPGSPLSQNNLSVFPLCPRVVYPVKPHTEAAHGHRYAPLPSLPSCGP
PATKRPALSSPASSSSRFSFQHSQSPVIAKPYQEPSVPDCVYPALRHNPYLMPHYSLGLN
SILPHPFPFYADRLKPRLTLSSHFLPFDGYAHLVHPLANGHKDFSLALSDTKQDLIVSPT
SEHKDNKNLMTKRTNYLRSPSEDLRDFKHSPPSNVHADFPIPSTSSASSMVTSLCGALPS
LAPGGCSPPLGTAASSDHLPSKPTPATQSNNVDAIDLRKTKHGGHIIGYKTLSYPLTRQN
GKIRYECNVCGKVFGQLSNLKVHLRVHSGERPFRCQTCNKNFTQLAHLQKHYLVHTGEKP
HECKVCHKRFSSTSNLKTHQRLHSGERPYQCKLCPARFTQFVHLKLHKRLHTGEQPHRCP
RCPCAYLHYCSLQVHLQGFCPLSPSVSHRHSPEELHRVNSEIERFDMSEAAEQLEAMAVE
AEMDKGNVIDLIKKMETHTRGDTELSIYKSVKECFAVQLHHSPLPLHHTSIKLESGCMSE
S
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggctcctctcaaggcttcacagcctcctcctctcagtgcagcacagccatgtta
acctcagaagggtcaccacaaagcacaggggtcataatagcagcgatggcagacacacag
gatgtagacatgacatcatggagggagacggactatgaggagaagtgcacttacatcgtg
aaggaccaacctctggaggaagagtccgaaaaccgcagcaggacacgggccgagagatcc
ttacccagaaacctggctctgaaacgccacctgaactcagcagaggtgcttggggtgacc
agtaaggagttgattccaaaggggacacgttttgggcctctggtgggagaaagctacacc
aatgaaacactgttaaaagatgccaacagaaagtacttttggagggtcttcttggagggg
cacttacaccatatcctggatggtttgaatgaggagaggagcaattggatgcgttatgtc
aacccagcccgtggtgtggaggagcagaacctggttgcatgccagagcggtttgaacatc
tatttctacaccatcaagcctcttcagcctggccaggagcttctggtgtggtactgccct
gaatttgccaagcgctgtaactaccccccaccgggccaactgaatattgactgtattgag
cagagtcaagctcgggagaagacaacagggaaacgaggacacagtgtctctgaaattctc
caagatgagccctcgaaatccttgactacatgccccagacgtccaggcagccctttgtct
cagaacaacctatcagtttttcctctctgtccccgcgttgtctacccagtcaagccccac
acagaagctgcccatggccacagatatgctcctctgccatctctgccatcctgtggccct
ccagctaccaaaaggccagctttaagtagtcctgcctcctctagttcgcgcttcagcttt
cagcacagtcaaagccctgttatagccaaaccttatcaagagccctctgtgcctgattgt
gtttatcctgctctgaggcacaatccctatctcatgcctcactactcacttggccttaac
agcattctacctcatccattcccattctatgctgatcgactgaaacctcgcttgacactc
tcatcccattttctgccatttgatggctatgcacacctcgtccaccctctggccaatgga
cataaagacttttcacttgcactatcagatacaaaacaagacctcattgtttcaccaacc
agtgagcacaaagacaacaagaacctcatgaccaaaaggacaaactacctcaggagcccc
tcagaagacctcagagatttcaaacactctcctcccagcaatgtccacgcagacttccct
ataccttctacatccagtgcctcatccatggtgacctcactctgcggagcactgccctct
cttgcacctggaggatgctcaccaccgctgggcacagctgcctcttcagaccatctccct
tcaaaacccacccctgccacacagagcaataatgtggatgcaatagacctcaggaagacc
aaacacggagggcatatcattggctacaagaccttgtcttaccccctcaccaggcagaat
ggaaagatccggtatgagtgcaacgtctgcggaaaagtctttgggcagctgtccaacctc
aaggtccatctgcgggtgcacagtggagagcgtcccttcaggtgtcaaacctgcaacaag
aacttcactcaactggcccacctgcagaaacactacctggttcacacaggagaaaagcct
catgaatgcaaggtgtgccataagcgattcagcagcactagtaacttgaagacccaccag
cggctacactcgggtgagaggccttaccagtgcaagctctgcccagcccggtttactcag
ttcgtccacctgaagctccacaaacgcctccacactggggagcaacctcaccggtgtcct
cgctgcccctgtgcctatctccactactgcagcctccaggtgcatctccaaggcttctgc
cctctctccccctcagtgtcccacagacactcaccagaggagctacacagagtcaactct
gagatcgagaggtttgacatgagcgaggcggcagagcaacttgaggccatggctgtggag
gctgagatggacaaggggaatgttattgatctaataaagaagatggagactcacaccaga
ggggacaccgagctaagcatctacaaatcagtaaaggagtgttttgctgttcagctacat
catagccctctacctctgcatcataccagcatcaaactggagtcaggttgcatgtcagag
tcctaa
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