Scomber japonicus (chub mackerel): 128377245
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Entry
128377245 CDS
T09718
Symbol
taf1a
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit A
KO
K15212
TATA box-binding protein-associated factor RNA polymerase I subunit A
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128377245 (taf1a)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
128377245 (taf1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1_subA
ARM_TT21_C
COG4_N
Motif
Other DBs
NCBI-GeneID:
128377245
NCBI-ProteinID:
XP_053193137
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Position
17:complement(21000418..21004429)
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AA seq
430 aa
AA seq
DB search
MPIGNLNDDCDSSEDNSTKEGRKSKLHFVNPISVETRNETGFHKSMRICLEQIREALLHH
RWQEAAEYMACYPQMLDDTTRGKHQQQRELIWRMATEILHHHHNSKMEDYNNIYERMKHS
GVKHYLLICLEHSFHLLLHGQIQDAKRELSAAESWRYGKESAAQYERTKLIHAYRSLLDY
IIWCDKKHAQSNTDYSDSANNKDMNNYFRQASVNLKEILKNPGIWDPFILSYVEMLEFYE
DHEEAEKVLNDYAYDNAFPPNPNAHVYLYEYFKRHDAPERKLMKVLKHLQTSVPSHELML
EYSFLLLWSDKKGDVQKALGVVLDMLDYACWRSNVDVWKRLKDIVDKLQLQEDWKEVVSE
KMAARKDWWPALHFTRFHTREDSRDNPQLMGVKASLTSILCPDLTLKYSAGEVINEGQTQ
RKKTKKTKKT
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcctattggtaatttgaatgatgactgtgattcctcggaggacaactcaacaaaagaa
ggaaggaagtcaaagctccattttgttaatcccattagtgttgagacgcgaaatgaaact
gggtttcacaagagcatgaggatctgtctagagcagatcagagaagcccttctgcatcat
agatggcaggaggcagctgaatatatggcatgttacccccaaatgttagacgacacaact
aggggcaaacatcagcagcaaagagagcttatttggagaatggccactgaaatcctccac
caccaccacaactcaaagatggaagactacaacaacatctacgaacgaatgaaacattca
ggagttaaacattacctgctgatctgcctggaacattcatttcacctgctgctccacggc
cagatccaggatgcaaagcgtgagctgtctgctgctgagagttggaggtacggcaaagag
tcagcagctcagtatgagaggactaaactgatccacgcctacagaagtttactggattat
atcatctggtgtgacaaaaagcatgcacagtccaacactgattattcagactctgccaac
aacaaggatatgaacaactacttcagacaggcttcagtgaatctgaaggagattttgaaa
aatcccggcatctgggatccgttcatattgagttatgttgagatgctggaattctatgag
gatcacgaagaggctgagaaagtcctgaatgactacgcatatgacaacgcatttcccccc
aaccccaatgctcatgtctatctgtacgaatacttcaagagacatgatgctccagagagg
aaattgatgaaagtgttgaagcacctccaaacttcagtaccaagtcacgagttgatgttg
gagtacagttttcttctgctttggtcagataaaaaaggtgatgttcagaaggctttggga
gtcgttctggatatgctggactacgcctgctggaggagcaacgtggacgtgtggaagcgt
ttaaaggatattgttgacaaattacagttacaagaggactggaaggaggtcgtctctgaa
aagatggctgcgagaaaagactggtggcctgcgctgcacttcacaagattccacaccagg
gaagactctagggacaacccgcagctgatgggggtgaaggcgtcactgacaagcatcctt
tgtccagacttaacgcttaaatactctgctggagaggtaatcaatgaagggcagacacaa
aggaagaagacgaagaagacaaagaaaacctaa
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