Scomber japonicus (chub mackerel): 128377357
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Entry
128377357 CDS
T09718
Name
(RefSeq) NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sjo04054
]
128377357
Pattern recognition receptors [BR:
sjo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128377357
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
NOD2_WH
PRY
SPRY
LRR_6
LRR_4
Motif
Other DBs
NCBI-GeneID:
128377357
NCBI-ProteinID:
XP_053193276
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All DBs
Position
17:complement(512250..517995)
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AA seq
1081 aa
AA seq
DB search
MDQSEDREEGVPPSKSSLCGEHDSQTKAQRIHQQRPDSPEPSCVSMKSDRSKGRLITFKH
GHQSADQRVHQQSSEVLSGQSVQQHQTQLDSIFMLLEENISRFVKNELKKMQKALSPDYP
ECLESQSEDKEVLDGEEEEQRRNSREAFLKITVHFLRRMKQEELAERLQNRAGAAKCRRK
LKSNLQKKFQCLFEGIAKAGNPTLLNQIYTPLYITEGGTAEVNDEHEIRQIETASRKPVR
PETTIRQEDIFKALPGRDEPIRTVMTKGVAGIGKTVLTQKFTLDWAEDKANQDIHFTFPF
TFRELNVLKEKKYSLVELVHHFFTETKEAGICRFEEFQVVFIFDGLDECRLPLDFHNTEI
LTDVTESTSVDVLLTNLIRGKLLPSARLWITTRPAAANQIPPECVGMVTEVRGFTDPQKE
EYFRKRFRDEEQASTIISHIKTSRSLHIMCHIPVFCWITATVLEDVLKSREGGELPKSLT
EMYIHFLVVQSKLKNIKYDGGTETDPHWSPESRKMIESLGKLAFEQLQKGNLIFYESDLT
ECGIDIRAASVYSGVFTQVFKEERGLYQDKVFCFVHLSVQEFLAALHVHLTFIKSGVNLL
EEQQTSSWSEVFKGKSARFYQRAVDEALKSPNGHLDLFLRFLLGLSLQTNQTLLRGLLTQ
TGSSSKTNQETVKYIKKKISENVSAERSINLFHCLNELNDRSLVEEIQQYLRSGRLSTDK
LSPAQWSALVFILLSSEKDLDVFDLKKYSASEDALLRLLPVVKASSKALLSGCNLSKKSC
AALSSVLRSQSSSLRDLDLSNNNLQNSGVKQLSAGLESPNCTLESLSLSGCLITEEGCAS
LASSLCSNPSHLRELDLSYNHPGDSGEKLLSAGLKDPHWRLDTLWVDHGGEQCLKPGVKK
YFCELTLDTNTVNRFLKLSDNNKKVIDVKEFQSYPDHPDRFEPWPQLLCSNGLTGRCYWE
VEWSGRVEISVSYRRIGRKGNRDDCVFGWNNQSWRLFCSDDRYSFRHNKIETPIPSSSSS
SSVSNRVAVYVDCPAGTLSFYRVSSDTLIHLHTFNTTFTEPLYAGFGFYPGSSVSVCPLS
E
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atggatcagagtgaggacagagaggagggagtccctccctctaaaagctctctgtgtggg
gaacatgacagccagaccaaagctcagaggatccatcagcagagaccagattctcctgaa
cccagctgtgtgtccatgaagagtgaccggtctaagggtcgacttattaccttcaaacat
ggacatcagtcagctgatcagagagttcatcagcagagctcagaggttctcagtggtcag
tctgtccagcagcatcaaacacagctggactccatatttatgctgctggaggagaacatc
agcaggtttgtgaagaacgagctgaagaagatgcagaaggctctgagtccagattaccca
gaatgcttagagagtcagagtgaggataaggaggtgttggatggtgaggaggaagagcag
aggaggaacagcagagaggcatttctgaagatcacagtgcacttcctgaggagaatgaag
caggaggagctggctgagcgtctgcagaacagagctggtgctgcaaagtgtcgacgtaaa
ctcaagtctaacctgcagaagaagttccagtgtctgtttgaggggatcgctaaagcagga
aacccaacccttctgaatcagatctacacaccactctacatcacagagggagggactgca
gaggtcaatgatgaacatgagatcagacagattgaaacagcatccaggaaaccagtcaga
ccagaaacaacaatcagacaagaagacatctttaaagccttacctggaagagatgaacca
atcagaacagtgatgacaaagggagtggctggcattgggaaaacagtcttaacacagaag
ttcactctggactgggctgaagacaaagccaaccaggacatacacttcacatttccattc
actttcagagagctgaatgtgctgaaagagaaaaagtacagcttggtggaacttgttcat
cacttctttactgaaaccaaagaagcaggaatctgcaggtttgaagagttccaggttgtg
ttcatctttgacggtctggatgagtgtcgacttcctctggacttccacaacactgagatc
ctgactgatgttacagagtccacctcagtggatgtgctgctgacaaacctcatcaggggg
aaactgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatc
cctcctgagtgtgtcggcatggtgacagaggtcagagggttcactgacccacagaaggag
gagtacttcaggaagagattcagagatgaggagcaggccagcaccatcatctcccacatc
aagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgct
acagttctggaggatgtgttgaaaagcagagagggaggagagctgcccaagagcctgact
gagatgtacatccacttcctggtggttcagtccaaactgaagaacatcaagtatgatgga
ggaactgagacagatccacactggagtccagagagcaggaagatgattgagtctctggga
aaactggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagacttgaca
gagtgtggcatcgatatcagagcagcctcagtgtactcaggagtgttcacacaggtcttt
aaagaggagagagggctgtaccaggacaaggtgttctgcttcgtccatctgagtgttcag
gagtttctggctgctcttcatgtccatctgacattcatcaagtctggagtcaatctgctg
gaagaacaacaaacctcatcctggtctgaagtgttcaaaggcaaatcagcacgtttctac
cagagagctgtggacgaggccttaaagagtccaaatggacacctggacttgttcctccgc
ttcctcctgggtctttcactgcagaccaatcagactctcctacgaggtctgctgacacag
acaggaagtagctcaaagaccaatcaggaaacagtcaagtacatcaagaagaagatcagt
gagaatgtgtctgcagagagaagcatcaatctgttccactgtctgaatgaactgaatgat
cgttctctagtggaggagatccaacagtacctgagatcaggacgtctctccacagataaa
ctgtctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaaaaagatctg
gacgtgtttgacctgaagaaatactctgcttcagaggacgctcttctgaggctgttacca
gtggtcaaagcttcaagtaaagctctgctgagtggctgtaacctctcaaagaaaagctgt
gcagctctgtcctcggttctcagatctcagtcctctagtctgagagatctggacctgagt
aacaacaacctgcagaattcaggagtgaagcagctttctgctggactggagagtccaaac
tgtacactggaaagtctcagtctgtcaggatgtctgatcacagaggaaggctgtgcttct
ctggcctcatctctgtgctccaacccctcccatctgagagagctggacctgagctacaat
cacccaggagactcaggagagaagttactgtctgctggactgaaggatccacactggaga
ctggacactctctgggtggaccatggtggagagcagtgcttaaaacctggtgtgaagaag
tatttctgtgaactcacactggacacaaacacagtgaatagattcctcaaactgtctgac
aacaacaagaaggtgatagacgtgaaggagtttcagtcatatcctgatcatccagacaga
tttgaaccctggcctcagctgctgtgcagtaatggtctgactggtcgctgttactgggag
gtcgagtggagtggaagagttgaaatatcagtgagttacagaagaatcggcaggaaagga
aaccgtgatgactgtgtgtttggatggaacaatcagtcctggagactgttctgctctgat
gatcgttactctttccgtcacaataagatagaaacacccatcccctcctcctcctcctcc
tcctctgtctctaacagagtagcagtgtatgtggactgtcctgctggcactctgtccttc
tacagagtctcctctgacacactgatccacctccacaccttcaacaccacattcactgaa
cctctgtatgctgggtttgggttttatcctggttcctcagtgtctgtgtgtcctctgtct
gagtga
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