Scomber japonicus (chub mackerel): 128377460
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Entry
128377460 CDS
T09718
Name
(RefSeq) NACHT, LRR and PYD domains-containing protein 5-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sjo04054
]
128377460
Pattern recognition receptors [BR:
sjo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128377460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
NACHT
FISNA
LRR_6
NOD2_WH
PRY
SPRY
LRR_1
LRR_4
DUF6063
Motif
Other DBs
NCBI-GeneID:
128377460
NCBI-ProteinID:
XP_053193387
LinkDB
All DBs
Position
17:1888859..2061645
Genome browser
AA seq
1698 aa
AA seq
DB search
MFEQTVSWKIRDASVLSKLVSQANNRPDSPEPSCVSMKSDRSNDRPIEFKHGHQSADQSV
HQQSSEVLSGQSVQQHQTQLDSIFKLLEENISRFVKIELKKIQKDLSPDYPECLESQSED
EEVLDGEEEEQRRSSSREAFLEITLHFLRRMKQEELAERLQSRTNAGRCRYKLKSNLQKK
FQCLFEGIAKAGNPTLLNEIYTPLYITEGGTAEVNDEHEVTQIETASRKPDRPETTIRHE
DFFKASPGRDEPIRTVMTKGVAGIGKTVLTQKFTLDWAEDKANQDIHFTFPFTFRELNGL
KEKKYSLVELVHHFFTETKEARICRFEEFQVVFIFDGLDECRLPLDFHNTEILTDVTEST
SVDVLLTNLIRGKLLPSARLWITTRPAAANQIPPECVGMVTEVRGFTDPQKEEYFRKKFR
DENQASTIISHIKTSRSLHIMCHIPVFCWITATVLEDVLKSREGGELPKTLTEMYIHFLV
LQAKLKNVKYDGGAETDPHWSPESRKMIESLGKLAFEQLQKGNLIFYESDLTECGIDIRE
ASVCSGVFTQVFKEERGLYQDKVFCFVHLSVQEFLAALHVHLTFIKSGVNLLAEERTTSQ
ICFYQSAVDEALKSPNGHLDLFLRFLLGLSLQTNQTLLQGLLTQTGSSSQTNQKTVKYIK
KKISENVSAERSINLLHCLNELNDHSLEEEIQHYLRSGSLSTDKLSPAQWSALVFILLSS
EKDLDVFDLKKYSASEEALLRLLEVVKASSKALLSGCNLSERSCAALSSVLSSQSSSLRD
LDLSNNNLQDSGVKQLSAGLESPHCGLETLRLNGCNLSERSCAALSSILSSQSSSLRELD
LSNNNLQDSGVKELSAGLESPHCTLETLSLSGCQITEEGCASLASALNSNPSHLRELDLS
DNNLQDSGLKQLSAGLEDPCWRLDTLRVDHGGEQWLKPDLQKYFCELTLDTNTVNRALKL
SDNNRKVTRVEEDQSYPDHPDRFDHWVQLMCSNGLTGRCYWEVEWKGGISISVSYRGINR
KGNVSENCVFGKNDQSWRLTCSDEDGYSVWHDKRQTYISSSFSSSSVSNRVAVSVDCPAG
TLSFYRVSYDTLIHLHTFNTTFTEPLYPGFGVWPDSSMSLCPLSEMDTLRVDHGGEQWLK
PGVKKSAAAARSSEGPKLFTASLKNSPEQQHESAESQPKQTKLPGSRRRVRSFQEADAGF
GASRKQTQGSELPGSKRRVRSFQEADAGFGASRKQTQGSELPGSRRRVRSFQEADAGFTR
KQTQSFQEADAGFGASRKQTQGLPGSRRRVYQEADAELPGSRRRVYQEADAGFTRKQTQE
LPGSRRRVRSFQEADAGFGASRKQTQGSELPGSKRRVRSFQEADAGFGASRKQTQGSELP
GSRRRVRSFQEADAGFTRKQTQSFQEADAGFGASRKQTQGSELPGSRRRVRSFQEADAGF
GASRKQTQGSELPGSRRRVYQEADAELPGSRRRVRSFQEADAGFTRKQTQGLPGSRRRAS
RKQTQGLPGSRRRVYQEADAGLGASRKQTQGLQQGLGRDLRIYSSELPGSRRRVRSFQEA
DAGFGASRKQTQGSELPGSKRRVRSFQEADAGFGASRKQTQGSELPGSRRRVRSFQEADA
GFTRKQTQSFQEADAGFGASRKQTQGSELPGSRRRVYQEADAGFTRKQTQSFQEADAGFT
RKQTQGLPGSRRRVYSRD
NT seq
5097 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagcagactgtgtcctggaagatcagagatgcatctgtgctctctaagctagtt
agccaagctaacaatagaccagattctcctgaacccagctgtgtgtccatgaagagtgac
cggtctaatgatcgacctattgagttcaaacatggacatcagtctgctgatcagagtgtt
catcagcagagctcagaggttctcagtggtcagtctgtccagcagcatcaaacacagctg
gactccatatttaagctgctggaggagaacatcagcaggtttgtgaagatcgagctgaag
aagatccagaaggatctgagtccagattacccagaatgcttagagagtcagagtgaggat
gaggaggtgttggacggtgaggaggaagagcagaggaggagcagcagcagagaggcattt
ctggagatcacactgcacttcctgaggagaatgaagcaggaggagctggctgagcgtctg
cagagcagaactaatgctggcaggtgtcgatataaactaaagtctaacctgcagaagaag
ttccagtgtctgtttgaggggatcgctaaagcaggaaacccaacccttctgaatgagatc
tacacaccgctctacatcacagagggagggactgcagaggtcaatgatgaacatgaggtc
acacagattgaaacagcatccaggaaaccagacagaccagaaacaacaatcagacatgaa
gacttctttaaagcctcacctggaagagatgaaccaatcagaacagtgatgacaaaggga
gtggctggcattgggaaaacagtcttaacacagaagttcactctggactgggctgaagac
aaagccaaccaggacatacacttcacatttccattcactttcagagagctgaatgggctg
aaagagaaaaagtacagcttggtggaacttgttcatcacttctttactgaaaccaaagaa
gcaagaatctgcaggtttgaagagttccaggttgtgttcatctttgacggtctggatgag
tgtcgacttcctctggacttccacaacactgagatcctgactgatgttacagagtccacc
tcagtggatgtgctgctgacaaacctcatcagggggaaactgcttccctctgctcgcctc
tggataaccacacgacctgcagcagccaatcagatccctcctgagtgtgtcggcatggtg
acagaggtcagagggttcactgacccacagaaggaggagtacttcaggaagaaattcaga
gatgagaatcaggccagtaccatcatctcccacatcaagacttcacgaagcctccacatc
atgtgccacatcccagtcttctgctggatcactgctacagttctggaggatgtgttgaaa
agcagagagggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtg
cttcaggccaaactgaagaatgtcaagtatgatggaggagctgagacagatccacactgg
agtccagagagcaggaagatgattgagtctctgggaaaactggcttttgagcagctgcag
aaaggcaacctgatcttctatgaatcagacctgacagagtgtggtatcgatatcagagaa
gcctcagtttgctcaggagtgttcacacaggtctttaaagaggagagagggctgtaccag
gacaaggtgttctgcttcgtccatctgagtgttcaggagtttctggctgctcttcatgtc
catctgacattcatcaagtctggagtcaatctgctggcagaagaaagaacaacatcccag
atatgtttctaccagagtgctgtggacgaggccttaaagagtccaaatggacacctggac
ttgttcctccgcttcctcctgggtctttcactgcagaccaatcagactctcctacaaggt
ctgctgacgcagacaggaagtagctcacagaccaatcagaaaacggtcaagtacatcaag
aagaagattagtgagaatgtgtctgcagagaggagcatcaatctgttgcactgtctgaat
gaactgaatgatcattctctagaggaggagatccaacactacctgagatcaggaagtctc
tccacagataaactgtctcctgctcagtggtcagctctggtcttcatcttactgtcatca
gaaaaagatctggatgtgtttgacctgaagaaatactctgcttcagaggaggctcttctg
aggctgctggaagtggtcaaagcttcaagtaaagctttgctgagtggctgtaacctctca
gagagaagctgtgcagctctgtcctcagttctcagctcccagtcctctagcctgagagat
ctggacctgagtaacaacaacctgcaggattcaggagtgaagcagctttctgctggactg
gagagtccacactgtggactggaaactctcaggctgaatggctgtaacctctcagagaga
agctgtgcagctctgtcctcaattctcagctcccagtcctcgagtctgagagagctggac
ctgagtaacaacaacctacaggattcaggagtgaaggagctttctgctggactggagagt
ccacactgtacactggaaacactcagtctgtcaggatgtcagatcacagaggaaggctgt
gcatctctggcctcagctctgaactccaacccctcccatctgagagagctggacctgagt
gacaacaacctccaggattcaggattgaagcagctttctgctggactggaggatccatgc
tggagactggacactctcagggtggaccatggtggagagcagtggttaaaacctgatctg
cagaagtatttctgtgaactcacactggacacaaacacagttaacagagccctcaaactg
tctgataacaacaggaaggtgacacgtgtggaggaggatcagtcatatcctgatcatcca
gacagatttgaccactgggttcagctgatgtgtagtaatggtctgactggtcgctgttac
tgggaggtcgagtggaaaggaggaattagtatatcagtgagttacagaggaatcaacagg
aaaggaaacgtcagtgaaaactgtgtgtttggaaagaacgatcagtcctggagactgacc
tgctctgatgaagacggttactctgtctggcacgataagagacaaacatacatctcctcc
tccttctcctcctcctctgtctctaacagagtagcagtgtctgtggactgtcctgctggc
actctgtccttctacagagtctcctatgacacactgatccacctccacaccttcaacacc
acattcactgaacctctgtatcctggatttggagtctggcctgattcctcgatgtctctg
tgtcctctgtctgagatggacactctcagggtggaccatggtggagagcagtggttaaaa
cctggtgtgaagaagtcagcagcagccgctcgctcctctgaaggaccgaagcttttcaca
gcgtctctgaaaaacagcccagaacaacagcatgagagcgctgagagtcaaccaaaacag
acaaagcttccaggaagcagacgcagggttcggagcttccaggaagcagacgcagggttc
ggagcttccaggaagcagacgcagggttctgagcttccaggaagcaaacgcagggttcgg
agcttccaggaagcagacgcagggttcggagcttccaggaagcagacgcagggttcggag
cttccaggaagcagacgcagggttcggagcttccaggaagcagacgcagggtttaccagg
aagcagacgcagagcttccaggaagcagacgcagggttcggagcttccaggaagcagacg
cagggtttaccaggaagcagacgcagggtttaccaggaagcagacgcagagcttccagga
agcagacgcagggtttaccaggaagcagacgcagggtttaccaggaagcagacgcaggag
cttccaggaagcagacgcagggttcggagcttccaggaagcagacgcagggttcggagct
tccaggaagcagacgcagggttctgagcttccaggaagcaaacgcagggttcggagcttc
caggaagcagacgcagggttcggagcttccaggaagcagacgcagggttcggagcttcca
ggaagcagacgcagggttcggagcttccaggaagcagacgcagggtttaccaggaagcag
acgcagagcttccaggaagcagacgcagggttcggagcttccaggaagcagacgcagggt
tcggagcttccaggaagcagacgcagggttcggagcttccaggaagcagacgcagggttc
ggagcttccaggaagcagacgcagggttcggagcttccaggaagcagacgcagggtttac
caggaagcagacgcagagcttccaggaagcagacgcagggttcggagcttccaggaagca
gacgcagggtttaccaggaagcagacgcagggtttaccaggaagcagacgcagagcttcc
aggaagcagacgcagggtttaccaggaagcagacgcagggtttaccaggaagcagacgca
gggttgggagcttccaggaagcagacgcagggtttacagcagggattagggagagatctc
aggatttacagctcagagcttccaggaagcagacgcagggttcggagcttccaggaagca
gacgcagggttcggagcttccaggaagcagacgcagggttctgagcttccaggaagcaaa
cgcagggttcggagcttccaggaagcagacgcagggttcggagcttccaggaagcagacg
cagggttcggagcttccaggaagcagacgcagggttcggagcttccaggaagcagacgca
gggtttaccaggaagcagacgcagagcttccaggaagcagacgcagggttcggagcttcc
aggaagcagacgcagggttcggagcttccaggaagcagacgcagggtttaccaggaagca
gacgcagggtttaccaggaagcagacgcagagcttccaggaagcagacgcagggtttacc
aggaagcagacgcagggtttaccaggaagcagacgcagggtttacagcagggattag
DBGET
integrated database retrieval system
