Scomber japonicus (chub mackerel): 128377464
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Entry
128377464 CDS
T09718
Name
(RefSeq) NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sjo04054
]
128377464
Pattern recognition receptors [BR:
sjo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128377464
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
NOD2_WH
PRY
LRR_6
SPRY
LRR_4
7TM_GPCR_Srsx
Motif
Other DBs
NCBI-GeneID:
128377464
NCBI-ProteinID:
XP_053193390
LinkDB
All DBs
Position
17:2957270..2975814
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AA seq
1191 aa
AA seq
DB search
MPDLPALIHGLIPCLLLTSSPRVFPGKRTSLLFLTLSMACSCLPVAVPVYLWLFLSSGFG
PLRKAQKLQLGPPHSCVSMKSDWSMREPVNFKYGNQSADQRVHQQSSEVLSGQPVQQHQT
QLDSIFMLLEENISRFVKNELKKMQKTLSPDYPECLESQSEDEEVLDGEEKEQRRSSREA
FLKITVHFLRRMKQEELAERLQSITFRAAKCRRKLKSNLQKNFQCVFEGIAKAGNPTLLN
QIYTPLYITEGGTAEVNDEHEVRQIETASRKPVRPETTIRQEDIFKASPGRDEPIRTVMT
KGVAGIGKTVLTQKFTLDWAEDKANQDIHFTFPFTFRELNVVKEKKYSLVELVHHFFTET
KEAGICRFEEFQVVFIFDGLDECRLPLDFHNTEILTDVTESTSVDVLLTNLIRGKLLPSA
RLWITTRPAAANQIPPECVGMVTEVRGFTDPQKEEYFGKRFRDKKEASTIISHIKISRSL
HIMCHIPVFCWITATVLEDVLKRRKRRELPKTLTEMYIHFLVVQSKVKNVKYDGGAETDP
HWSPENRKMIESLGKLAFEQLQKGNLIFYESDLMECGIDIRAASVCSGVFTEIFKEERGL
YQDKVFCFVHLSVQEFLAALHVHLTFIKSEVNLLAEERTTSRLSSVFKEKPEPTRFYQRA
VDEALMSPNGHLDLFLRFLLGLSLQTNQTLLRGLLTQTGSSSQTNQKTVEYIKKKISENL
SAERSINLFYCLNELNDRSLVEEIQQSLRSGSLSTDRLSPAQWSALVFILLSSEKDLDVF
DLKKYSASEKALLRLLPVVKASNKALLSGCNLSERSCAALSSVLSSQSSSLRDLDLSNSN
LQDSGVKQLHAGLESPHCGLETLSLSGCLITEEGCASLASALSSNPSHLRDLDLSNNNLQ
DSGVKQLSAGLESPHCTLETLSLSGCLITEEGCASLASALSYNPSHLRELDLSYNHPGDS
GEKLLSAGLEDPHWRLDTLRVDHGGEHRLKPGLKKYFCELTLDTNTVNRRLQLSDNNRKV
TQMKKDQSYPDHPDRFDSKAQLLCSNVLTGRCYWEVEWRGRVFISVSYSGINRRGASDDC
VFGWNDQSWSLKCSDHDDDFGYYVFHNKRGASISSSSSVSNRVAVYVDCPAGTLSFYRVS
SDTLIHLHTFNTTFTKPLYAGFWVGPGSSVSVSPLSEGESPPMETKNHTAD
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgccagaccttccagcactgattcacggactgattccctgcttgcttttgacctcctct
cctcgtgtcttccctggtaaacgcaccagtcttctgttcctgactttgagtatggcctgt
tcctgtctacctgtggctgtccctgtctacctgtggctgttcctgtcctccggtttcggt
cctctcaggaaagcccagaaactccagcttggtccacctcatagctgtgtgtccatgaag
agtgactggtctatgcgcgaacctgttaacttcaaatatggcaatcagtctgctgatcag
agagttcatcagcagagctcagaggttctcagtggtcagcctgtccagcagcatcaaaca
cagctggactccatatttatgctgctggaggagaacatcagcaggtttgtgaagaatgag
ctgaagaagatgcagaagactctgagtccagattacccagaatgcttagagagtcagagt
gaggatgaggaggtgttggacggtgaggagaaagagcagaggaggagcagcagagaggca
tttctgaagatcacagtgcacttcctgaggagaatgaaacaggaggagttggctgagcgt
ctgcagagcataacgttcagagctgcaaagtgtcgacgtaaactgaagtctaacctacaa
aagaatttccagtgtgtgtttgaggggatcgctaaagcaggaaacccaacccttctgaat
cagatctacacaccgctctacatcacagagggagggactgcagaggtcaatgatgaacat
gaggtcagacagattgaaacagcatccaggaaaccagtcagaccagaaacaacaatcaga
caagaagacatctttaaagcctcacctggaagagatgaaccaatcagaacagtgatgaca
aagggagtggctggcattgggaaaacagtcttaacacagaagttcactctggactgggct
gaagacaaagccaaccaggacatacacttcacatttccattcactttcagagagctgaat
gtggtgaaagagaaaaagtacagcttggtggaacttgttcatcacttctttactgaaacc
aaagaagcaggaatctgcaggtttgaagagttccaggttgtgttcatctttgacggtctg
gatgagtgtcggcttcctctggacttccacaacactgagatcctgactgatgttacagag
tccacctcagtggatgtgctgctgacaaacctcatcagggggaaactgcttccctctgct
cgcctctggataaccacacgacctgcagcagccaatcagatccctcctgagtgtgtcggc
atggtgacagaggtcagagggttcactgacccacagaaggaggagtacttcgggaagaga
ttcagagataagaaggaggccagcacaatcatctcccacatcaagatatcacgaagcctc
cacatcatgtgccacatcccagtcttctgctggatcactgctacagttctggaggatgtg
ttgaaaagaagaaagagaagagagctgcccaagaccctgactgagatgtacatccacttc
ctggtggttcagtccaaagtgaagaacgtcaagtatgatggaggagctgagacagatcca
cactggagtccagagaacaggaagatgattgagtctctgggaaaactggcttttgagcag
ctgcagaaaggcaacctgatcttctatgaatcagacctgatggagtgtggcatcgatatc
agagcagcctcagtctgctcaggagtgttcacagagatctttaaagaagagagagggctc
taccaggacaaggtgttctgcttcgtccatctgagtgttcaggagtttctggctgctctt
catgtccatctgacattcatcaagtctgaagtcaatctgctggcagaagaaagaacaaca
tccaggttgtctagcgtctttaaagaaaaacctgaaccaacccgtttctaccagagagct
gtggatgaggccttaatgagtccaaatggacacctggacttgttcctccgcttcctcctg
ggtctttcactgcagaccaatcagactctcctacgaggtctgctgacacagacaggaagt
agctcacagaccaatcagaaaacagttgagtacatcaagaagaagatcagtgagaatctg
tctgcagagagaagcatcaatctgttctactgtctgaatgaactgaatgatcgttctcta
gtggaggagatccaacagtccctgagatcaggaagtctctccacagatagactgtctcct
gctcagtggtcagctctggtcttcatcttactgtcatcagaaaaagatctggatgtgttt
gacctgaagaaatactctgcttcagagaaggctcttctgaggctgctgccagtggtcaaa
gcctccaacaaagctctactgagtggctgtaacctctcagagagaagctgtgcagctctg
tcctcagttctcagctcccagtcctctagtctgagagatctggacctgagtaacagcaac
ctgcaggattcaggagtgaagcagcttcatgctggattggagagtccacactgtgggctg
gaaactctcagtctgtcaggatgtctgatcacagaggaaggctgtgcctctctggcctca
gctctgagctccaacccctcccatttgagagatctggacctgagtaacaacaacctgcag
gattcaggagtgaagcagctttctgctggattggagagtccacactgtacactagaaact
cttagtttgtcaggatgtctgatcacagaggaaggctgtgcttctctggcctcagctctg
agctacaacccctcccatctgagagagctggacctgagctacaaccatccaggagactca
ggagagaagcttttgtctgctggactggaggatccacactggagactggacactctcagg
gtggaccatggtggagagcacaggttaaaacctggtctgaagaagtatttctgtgaactc
acactggacacaaatacagtgaacagaagactccaactgtctgataacaacaggaaggtg
acacaaatgaagaaggaccagtcatatcctgatcatccagacagatttgactccaaggct
cagctgctgtgtagtaatgttctgactggtcgctgttactgggaggtcgagtggagagga
agagtttttatatcagtgagttacagcggaatcaacaggagaggagccagtgatgactgt
gtgtttggatggaacgatcagtcctggagtttgaaatgctctgatcatgatgatgacttt
ggttactatgtctttcacaataagagaggagcatccatctcctcctcctcctctgtctct
aacagagtagcagtgtatgtggactgtcctgctggcactctgtccttctacagagtctcc
tctgacacactgatccacctccacaccttcaacaccacattcactaaacctctgtatgct
gggttttgggtcgggcctggttcctcagtgtctgtgagtcctctgtctgagggagagtct
cctcctatggagacaaaaaatcacactgctgactga
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