Scomber japonicus (chub mackerel): 128377469
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Entry
128377469 CDS
T09718
Name
(RefSeq) NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sjo04054
]
128377469
Pattern recognition receptors [BR:
sjo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128377469
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
NOD2_WH
PRY
LRR_6
SPRY
7TM_GPCR_Srsx
LRR_4
Motif
Other DBs
NCBI-GeneID:
128377469
NCBI-ProteinID:
XP_053193396
LinkDB
All DBs
Position
17:3100753..3115250
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AA seq
1117 aa
AA seq
DB search
SCVSMKSDWSMREPVNFKYGNQSADQRVHQQSSEVLSGQSVQQHQTQLDSIFMLLEENIS
RFVKNELKKMQKTLSPDYPECLESQSEDEEVLDGEEKEQRRSSREAFLKITVHFLRRMKQ
EELAERLQSITFRAAKCRRKLKSNLQKNFQCVFEGIAKAGNPTLLNQIYTPLYITEGGTA
EVNDEHEVRQIETASRKPVRPETTIRQEDIFKASPGRDEPIRTVMTKGVAGIGKTVLTQK
FTLDWAEDKANQDIHFTFPFTFRELNVVKEKKYSLVELVHHFFTETKEAGICRFEEFPVV
FIFDGLDECRLPLDFHNTEILTDVTESTSVDVLLTNLIRGKLLPSARLWITTRPAAANQI
PPECVGMVTEVRGFTDPQKEEYFGKRFRDKKEASTIISHIKISRSLHIMCHIPVFCWITA
TVLEDVLKRRKRRELPKTLTEMYIHFLVVQSKVKNVKYDGGAETDPHWSPENRKMIESLG
KLAFEQLQKGNLIFYESDLMECGIDIRAASVCSGVFTEIFKEERGLYQDKVFCFVHLSVQ
EFLAALHVHLTFIKSGVNLLAEERTTSRLSSVFKEKPEPTRFYQRAVDEALMSPNGHLDL
FLRFLLGLSLQTNQTLLRGLLTQTGSSSQTNQKTVEYIKKKISENLSAERSINLFYCLNE
LNDRSLVEEIQQSLRSGSLSTDRLSPAQWSALVFILLSSEKDLDVFDLKKYSASEKALLR
LLPVVKASNKALLSGCNLSERSCAALSSVLSSQSSSLRDLDLSNSNLQDSGVKQLHAGLE
SPHCGLETLSLSGCLITEEGCASLASALSSNPSHLRDLDLSNNNLQDSGVKQLSAGLESP
HCTLETLSLSGCLITEEGCASLASALSYNPSHLRGLDLSYNHPGDSGEKLLSAGLEDPHW
RLDTLRVDHGGEHRLKPGLKKYFCELTLDTNTVNRRLQLSDNNRKVTQMKKDQSYPDHPD
RFDSKAQLLCSNVLTGRCYWEVEWRGRVFISVSYSGINRRGASDDCVFGWNDQSWSLKCS
DHDDDFGYYVFHNKRGASISSSSSVSNRVAVYVDCPAGTLSFYRVSSDTLIHLHTFNTTF
TKPLYAGFWVGPGSSVSVSPLSEGESPPMETKNHTAD
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
agctgtgtgtccatgaagagtgactggtctatgcgcgaacctgttaacttcaaatatggc
aatcagtctgctgatcagagagttcatcagcagagctcagaggttctcagtggtcagtct
gtccagcagcatcaaacacagctggactccatatttatgctgctggaggagaacatcagc
aggtttgtgaagaatgagctgaagaagatgcagaagactctgagtccagattacccagaa
tgcttagagagtcagagtgaggatgaggaggtgttggacggtgaggagaaagagcagagg
aggagcagcagagaggcatttctgaagatcacagtgcacttcctgaggagaatgaaacag
gaggagttggctgagcgtctgcagagcataacgttcagagctgcaaagtgtcgacgtaaa
ctgaagtctaacctacaaaagaatttccagtgtgtgtttgaggggatcgctaaagcagga
aacccaacccttctgaatcagatctacacaccgctctacatcacagagggagggactgca
gaggtcaatgatgaacatgaggtcagacagattgaaacagcatccaggaaaccagtcaga
ccagaaacaacaatcagacaagaagacatctttaaagcctcacctggaagagatgaacca
atcagaacagtgatgacaaagggagtggctggcattgggaaaacagtcttaacacagaag
ttcactctggactgggctgaagacaaagccaaccaggacatacacttcacatttccattc
actttcagagagctgaatgtggtgaaagagaaaaagtacagcttggtggaacttgttcat
cacttctttactgaaaccaaagaagcaggaatctgcaggtttgaagagttcccggttgtg
ttcatctttgacggtctggatgagtgtcggcttcctctggacttccacaacactgagatc
ctgactgatgttacagagtccacctcagtggatgtgctgctgacaaacctcatcaggggg
aaactgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatc
cctcctgagtgtgtcggcatggtgacagaggtcagagggttcactgacccacagaaggag
gagtacttcgggaagagattcagagataagaaggaggccagcacaatcatctcccacatc
aagatatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgct
acagttctggaggatgtgttgaaaagaagaaagagaagagagctgcccaagaccctgact
gagatgtacatccacttcctggtggttcagtccaaagtgaagaacgtcaagtatgatgga
ggagctgagacagatccacactggagtccagagaacaggaagatgattgagtctctggga
aaactggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagacctgatg
gagtgtggcatcgatatcagagcagcctcagtctgctcaggagtgttcacagagatcttt
aaagaagagagagggctctaccaggacaaggtgttctgcttcgtccatctgagtgttcag
gagtttctggctgctcttcatgtccatctgacattcatcaagtctggagtcaatctgctg
gcagaagaaagaacaacatccaggttgtctagcgtctttaaagaaaaacctgaaccaacc
cgtttctaccagagagctgtggatgaggccttaatgagtccaaatggacacctggacttg
ttcctccgcttcctcctgggtctttcactgcagaccaatcagactctcctacgaggtctg
ctgacacagacaggaagtagctcacagaccaatcagaaaacagttgagtacatcaagaag
aagatcagtgagaatctgtctgcagagagaagcatcaatctgttctactgtctgaatgaa
ctgaatgatcgttctctagtggaggagatccaacagtccctgagatcaggaagtctctcc
acagatagactgtctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaa
aaagatctggatgtgtttgacctgaagaaatactctgcttcagagaaggctcttctgagg
ctgctgccagtggtcaaagcctccaacaaagctctactgagtggctgtaacctctcagag
agaagctgtgcagctctgtcctcagttctcagctcccagtcctctagtctgagagatctg
gacctgagtaacagcaacctgcaggattcaggagtgaagcagcttcatgctggattggag
agtccacactgtgggctggaaactctcagtctgtcaggatgtctgatcacagaggaaggc
tgtgcctctctggcctcagctctgagctccaacccctcccatttgagagatctggacctg
agtaacaacaacctgcaggattcaggagtgaagcagctttctgctggattggagagtcca
cactgtacactagaaactcttagtttgtcaggatgtctgatcacagaggaaggctgtgct
tctctggcctcagctctgagctacaacccctcccatctgagagggctggacctgagctac
aaccatccaggagactcaggagagaagcttttgtctgctggactggaggatccacactgg
agactggacactctcagggtggaccatggtggagagcacaggttaaaacctggtctgaag
aagtatttctgtgaactcacactggacacaaatacagtgaacagaagactccaactgtct
gataacaacaggaaggtgacacaaatgaagaaggaccagtcatatcctgatcatccagac
agatttgactccaaggctcagctgctgtgtagtaatgttctgactggtcgctgttactgg
gaggtcgagtggagaggaagagtttttatatcagtgagttacagcggaatcaacaggaga
ggagccagtgatgactgtgtgtttggatggaacgatcagtcctggagtttgaaatgctct
gatcatgatgatgactttggttactatgtctttcacaataagagaggagcatccatctcc
tcctcctcctctgtctctaacagagtagcagtgtatgtggactgtcctgctggcactctg
tccttctacagagtctcctctgacacactgatccacctccacaccttcaacaccacattc
actaaacctctgtatgctgggttttgggtcgggcctggttcctcagtgtctgtgagtcct
ctgtctgagggagagtctcctcctatggagacaaaaaatcacactgctgactga
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integrated database retrieval system
