Scomber japonicus (chub mackerel): 128377764
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Entry
128377764 CDS
T09718
Symbol
sptbn1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128377764 (sptbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sjo04812
]
128377764 (sptbn1)
Cytoskeleton proteins [BR:
sjo04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
128377764 (sptbn1)
Intermediate filaments
Intermediate filament-binding proteins
128377764 (sptbn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
PH_11
Motif
Other DBs
NCBI-GeneID:
128377764
NCBI-ProteinID:
XP_053193568
LinkDB
All DBs
Position
2:1013833..1047002
Genome browser
AA seq
2340 aa
AA seq
DB search
MMTTVAAEFEPMELQQQYSSSDTVNNRWDDEWDNENSSARLFERSRIKALADEREAVQKK
TFTKWVNSHLSRVSCRITDLYMDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDK
ALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKRSAKDA
LLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAF
NLAEQHLGLTKLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAI
ETEKMIEKYESLASDLLEWIEQTIIILNNRKFANSLMGVQQQLQAFNTYRTVEKPPKFTE
KGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRTELIRQE
KLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDITAYEERV
QAVVAVAKELEVEHYHDIKRITARKDNVIRLWEYLLELLKARRQRLEMNLGLQRVFQEML
YIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQADRVKAVSTNATKFSVND
SGYKPCDPQVIQDRVSHLEFCYQELTQLAAERRARLEESRRLWKFFWEMAEEEGWIREKE
QILSSLEHGKDLTGTLRLLSEQRALEDEMSGRAGHLQHTIAEGQAMVEAGHFAASKIQDR
IADLQAQWAALEQLAAARKKRLEEALALHQFQADADDVDAWTLDALRIVSSGETGHDEFS
TQALVRKHKDAAAEVASYRPVIDSLHEQAAALPKEEAESEMVQGRLAGIEERYKEVAELT
KLRKQALQDALALYKMFSEADACEVWIDEKELWLNSMEIPEKLEDLEVVQHRFESLEPEM
NNQASRVAVVNQIARQLIHNGHPSEKDIKTQQDKLNNRWSQFRDLVDQKKDSLNSALGVQ
NYHLECNETKSWIKEKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEDKLGDLRGE
AQRLAEEHPDQAKAITGRLAEITGVWEEMKNTLKTREESLGEARKLQQFLRELDDFQSWL
SRTQTAIASEDMPNTLAEAEKLMAQHEGIKNEIQNYEEDYQKMRDMGEMVTQGQTDAQYM
FLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMP
TTLEAAEAAIKKQEDFMTTMDANEDKINSVVEAGRRLASDGNINAERIQERVASIDDRHK
KNREAAVELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMTYDEARNLHSKWLKHQA
FMAELQSNKEWLDKIQKDGMLLVSEKPETEAVVKEKLSALHSMWEDLESTTQTKAQCLFD
ANKAELFTQSCADLDKWLGGLEGQIQSDDYGKDLTSVNILLKKQQMLENQVEVRQREVVE
LQSQVKALGQEVKDTDEVDGRRQVVEKKFQELLEPLRRRKNLLVASREVHQFNRDVEDEI
LWVQERMAVATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRIDDILERSQSLLQDESSD
AEAIRQRLADLQQLWRQLMEEAERRHGRLEEAHKAQQYYFDAAEAEAWMSEQELYMMSEE
KAKDELSAVTMLKKHQIVEQAVEDYAEAVHLLSKTSRGLVSDGHPESERISMRQSQVDKL
YAGLKDLSEERRGKLDERLRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQER
FREFARDTGNIGQERVDSVNRQADELINAGHGDAATVAEWKDGLNEAWADLLELIDTRTQ
ILAASFELHKFYHDAKEILGRIVDKQKKLPEEVGRDQNTVETLQRMHTTFEHDIQALGTQ
VRQLQDDATRLQSAYAGDKADDIQRRESEVLEAWRSLLEACDGRRVRLMDTGDKFRFFSM
VRDLMLWMEDVIRLIEAQENPRDVSSVELLMNNHQGIKAEIDARNDSFTSCIELGKSLLA
RKHYASEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPY
LSSREMGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRQQEEEERMRK
PPTPEPAVIEQEEEPLQSGVINQNGLPSDQDSPRDGVDGVELVNGLVERSSKEPSPTPSP
TSGRKSKTSQSSTLPSKNQDSGSQLEGLLHRKHEWEGQNKKASNRSWHNVFCVVIGQDLC
FYKDSKAAAQGVPYHAELPVSLKDAACDVASDYKKKKHVFKLRLTDGNEYLFQAKDEEEM
STWIQAILNAGAADVQSSNPGTPASGRAQTLPAESSPGKREKDKEKDKEKRFSLFSKKKQ
NT seq
7023 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgacggtggcggcggagttcgagccgatggagctgcagcagcagtacagcagc
agcgatacggtgaacaaccgctgggacgacgagtgggacaacgagaacagctcggctcga
ctgttcgaacgctcccgcatcaaagccctcgcagatgagcgcgaggcggtgcagaagaag
accttcactaagtgggtcaactcccacctgtccagagtctcctgcaggatcacagacctg
tacatggacctgagggatggacgcatgctcatcaagctgctggaggtcctatcaggagag
agactgccgaagcccaccaaaggccggatgcggatccactgcctggagaacgtggacaaa
gctctgcagttcctgaaggaacagcgggttcacctggagaacatgggatcccacgacatc
gtcgacggcaaccaccgactgacgctgggcctcatctggaccatcatcctccgcttccag
atccaggacatcagtgtggagactgaagacaacaaagagaagagatcagctaaagatgct
ctgctactgtggtgtcagatgaagacggccgggtatccaaacgtcaacatccacaacttc
agcaccagctggagagacggcatggccttcaacgccctcatccacaaacacagacctgat
ctgatcgactttgacaaactgaagaagtccaacgctcactacaacctgcagaacgccttt
aacctggcagagcaacacctgggcctgaccaagctgctggaccccgaggatatcagtgtg
gaccatcctgatgagaagtcagtcatcacctacgtggtgacatactatcattacttctct
aagatgaaagctctgaaggtcgagggaaaacgtattgggaaggtgttggataacgccatc
gagacggagaagatgatcgagaagtacgagtctctggcgtcggacctgctggagtggatc
gagcagaccatcatcatcctcaacaacaggaagttcgccaactctctgatgggagtccag
cagcagctgcaggcgttcaacacctaccggaccgtggagaaacctccaaagttcacagag
aaaggaaacctggaggttctcctcttcaccattcagagtaaaatgagagcgaacaatcag
aaagtttacatgccccgagaaggaaaactcatctcagacatcaataaggcctgggagagg
ttggagaaggcggagcatgagagggagctggctctgaggacggagctgattcgtcaggag
aaactggaacagctggcgagacgtttcgaccgcaaggcggcgatgagagagacttggctg
agcgagaaccagaggctggtgtcacaggacaactttggtttcgaccttcaggccgttgag
gcggccacaaagaagcatgaagcaatcgagacggacattacagcgtatgaagagcgcgtg
caggctgtggttgccgtggcgaaggaactggaagtggagcattaccacgatattaaacgc
atcaccgccaggaaggacaacgtaatccggctgtgggaatacctgctggagctgctgaag
gcccgcagacagaggctggagatgaacctgggcctgcagagggtcttccaggagatgctc
tacatcatggactggatggacgagatgaagatgctgctgctgtctcaggattatgggaag
catctgctgggtgtggaggacctgctgcagaaacacgccctggtggaggctgacatcgcc
atccaggctgacagggtgaaggcggtctccaccaacgccaccaagttctccgtgaacgac
agcggctacaagccctgtgaccctcaggtcatccaagaccgggtgtcccacctcgagttc
tgctaccaggagctgacccagctcgctgcagaacgccgggcccgcctggaggagtcccgt
cgcctctggaagttcttctgggagatggccgaggaggagggttggatccgtgagaaggag
cagatcctgtcctctctcgagcatggcaaggacctgacggggacgctgcgcctcctcagc
gagcagcgtgccctggaggacgagatgagtggccgcgccggccacctccagcacactatc
gcagagggccaggccatggtggaggccggccacttcgctgcctcaaagatccaggatcga
atcgctgacctgcaggctcagtgggcagcactggagcagctggcagcagcgaggaagaag
aggctggaggaagctctggcgctgcaccagttccaggccgacgcagacgatgtcgacgcc
tggacgctggacgccctgcgtatcgtctccagtggagagacgggccacgatgagttctcc
acccaggctctggtcaggaagcacaaggacgcagcagcagaagtggcgagctaccggcca
gtcatcgactcactccatgagcaggccgccgcgctgcctaaagaggaggcggagtcagag
atggtgcaagggcggctggcgggcattgaggagcgctacaaggaggtggccgagctcaca
aagctgaggaagcaggcgctgcaggatgctctggctctctacaagatgttcagcgaggcc
gacgcctgcgaggtttggatcgatgagaaggagctgtggctgaacagcatggagatcccc
gaaaaactggaggacctggaggtggtacagcacagatttgagagtctggagccagagatg
aacaaccaggcgtctcgtgttgctgtggtaaaccagatcgcccggcagctgattcacaac
ggtcacccgagcgagaaggacatcaagacccagcaggacaaactcaacaacaggtggagc
cagttccgtgacctggtggaccagaagaaggactccctgaactctgctctgggtgtgcag
aactaccacctcgaatgtaatgagaccaagtcctggatcaaagagaagaccaaggtcatt
gagtccacgcaggagctgggcaacgacctcaccggtgtcatggccctgcagcgcaaactg
accggcatggagcgcgaccttgccgccatcgaggacaagctgggcgacctgcgaggcgag
gcccagaggctggcggaggaacacccggatcaggccaaggccatcacaggccgcctggct
gagatcaccggcgtctgggaggaaatgaagaacactctgaagacccgcgaggagtctctg
ggagaggccaggaagctgcagcagttcctgcgtgagctggatgacttccagtcctggctg
tcccgcactcagacagccatcgcctccgaggacatgcccaacacgctggctgaggccgag
aagctcatggcccaacacgaaggtatcaagaatgagatccagaactacgaggaggactac
cagaagatgcgagacatgggggagatggtgacgcaaggccagacagacgcgcagtacatg
ttcctgcgacagcggctgcaggctctcgacaccggctggaacgagctgcacaagatgtgg
gagaaccggcagaacctgctgtcccagtcccacgcttaccagctgttcctcagggacacc
aagcaggccgaggccttcctcaacaaccaggagtacgtcctggctcacaccgagatgccc
accactctcgaggccgccgaggccgccatcaaaaagcaggaagacttcatgaccaccatg
gacgccaacgaggataagatcaacagtgttgtggaggccggcaggcggctggccagcgac
ggaaacatcaacgctgaacggatccaggagcgagttgcctccatcgacgacagacataag
aagaacagggaggctgcagtggagctgctgatgagactgaaggacaacagagacctgcag
aagttcctccaggactgccaggagctgtctctgtggatcaatgagaagatgctaacagct
caggacatgacctacgacgaggcccgaaacctgcacagcaagtggctgaagcaccaggcc
ttcatggccgagctgcagtccaacaaggagtggctcgataagatccagaaggacggcatg
ctgctggtgtcggagaagccggagacagaggcggtggtgaaggagaagctgtcggcgctg
cacagcatgtgggaggatctggagtccaccacgcagaccaaagctcagtgtctgttcgac
gctaacaaggccgagctgttcacgcagagctgcgccgacctcgacaagtggctcggcggc
ctggagggtcagatccagtccgacgactacggcaaagacctgacctccgtcaacatcctg
ctcaagaaacaacagatgctggagaaccaggtggaggtgcgtcagcgggaggtggtggag
ctgcagagccaggtgaaggcgctcggtcaggaagtgaaggacactgacgaggtggacggc
cggcgccaggtggtggagaagaagttccaggagctgctggagccgctgcgccgccgcaag
aacctgctggtggcgtccagagaggttcaccagttcaaccgggacgtggaggatgagatc
ctgtgggttcaggagaggatggccgtcgccacgtccaccgaccacggacacaacctgcag
accgtccagctgctcatcaagaagaatcagactctacagaaggagatccagggccatcag
cctcgcatcgacgacatcctggagcgcagccagagcctcctgcaggacgagtcgtccgac
gccgaggccatcaggcaacggctggccgacctgcagcagctgtggcggcagctgatggag
gaggcggagcgtcgccacggccggctggaggaggcacacaaggcccagcagtactacttt
gacgcggcggaggcggaggcgtggatgagcgagcaggagctgtacatgatgtcagaggag
aaggcgaaggacgagctgagcgccgtcaccatgctgaagaaacaccagatcgtggagcag
gcggtggaggactacgctgaggccgtccacctgctgtccaagaccagcagaggactggtg
tctgacggacacccagagagtgagcggatcagcatgcggcagtctcaggtggataagctg
tacgccgggctgaaggacctatcagaggagcggaggggcaaactggacgagaggctccgc
ctcttccagctgaaccgagaggtggacgacctggagcagtggatcgctgagagggaagtg
gtggccggatcccacgagctgggccaggactacgaacacgttactatgttgcaggagcgt
ttccgggagttcgctcgggacaccgggaacatcggccaggagcgcgtggactctgtgaac
cggcaggcggacgagctgatcaacgcggggcacggcgacgcggccacggtggcggagtgg
aaggacgggctgaacgaagcctgggccgacctgctggagctcatcgacacgcggacgcag
atcctcgccgcctccttcgagctccacaagttctaccacgacgccaaagagatcctggga
cgcatcgtggacaagcagaagaagctgccggaggaggtgggacgcgaccagaacaccgtg
gagacgctgcagaggatgcacaccaccttcgaacacgacatccaggcgctgggaactcag
gtgaggcagctgcaggatgacgcgacgcgcctgcagtcggcgtacgccggcgacaaagcg
gacgacatccagcggcgtgagagcgaggtgctggaggcgtggaggagtctgctggaggcg
tgcgacggccgccgggtccgcctcatggacaccggagacaagttccgcttcttcagcatg
gtccgagacctgatgctgtggatggaggacgtgatccgactcatcgaggcccaggagaac
cccagggatgtgtcctcggtggagttactgatgaacaaccatcagggaatcaaagctgag
atcgacgctcgtaacgacagtttcacttcctgcatcgagctcgggaagtcgctgctcgcc
aggaaacactacgcttcagaggagattaaggagaagctgctgcagctgaccgataaaagg
aaagacatgatcgataagtgggaggatcgatgggagtggctgcgactcatcctggaggtg
caccagttctcccgggacgcgggcgtggccgaggcctggctgctgggtcaggagccatac
ctgtccagcagggagatggggcagagcgtcgacgaggtggagaagctcatcaaacgccac
gaagccttcgagaagtctgccgccacctgggaggagcgcttctccgccctggagaggctg
actacgctggagcttctggaggtgaggaggcagcaggaggaagaggagcggatgaggaag
ccaccgactccagagccggctgtgattgaacaggaggaagaaccgctgcagagcggagtc
atcaaccagaacggactcccatcggatcaggactctcctcgggacggcgttgacggcgtg
gagctggtgaacggtttggtggagagaagctccaaggagccgagtccgaccccgtcgccg
acctccggcaggaagagtaagaccagccagtccagcacgctgccctccaagaaccaggac
tctggctcccagctggaaggactcctgcaccgcaaacacgagtgggaggggcagaacaag
aaggcgtccaacaggtcgtggcacaacgtgttctgcgtggtgattggtcaggatctgtgt
ttctataaggacagcaaggcggcggcgcagggcgtcccgtaccacgccgagcttcctgtc
agcctgaaggacgccgcctgcgacgtcgcctccgactacaagaagaagaaacacgtcttc
aaactcagactcactgatggaaatgaatatctgttccaagccaaagatgaagaggagatg
agcacctggatccaggccatcctgaacgccggcgccgccgacgtgcagagcagcaacccg
gggacgccggcgtcgggccgcgcccagacgctgccggccgagtccagccccggcaagaga
gagaaggacaaagagaaggacaaggagaagcgcttcagcctgttcagcaagaagaagcag
tag
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integrated database retrieval system
