Scomber japonicus (chub mackerel): 128378272
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Entry
128378272 CDS
T09718
Symbol
cacna1ha
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04010
MAPK signaling pathway
sjo04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128378272 (cacna1ha)
04020 Calcium signaling pathway
128378272 (cacna1ha)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sjo04040
]
128378272 (cacna1ha)
Ion channels [BR:
sjo04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
128378272 (cacna1ha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
128378272
NCBI-ProteinID:
XP_053193705
LinkDB
All DBs
Position
18:complement(12351102..12458380)
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AA seq
2538 aa
AA seq
DB search
MTDGEGRVRFQYAECPEGQEQEEVLEEVRLAIPTAYRNDTPGCDVDPGGGCDQQEEGEVE
RRRKGSREGGEAEWSPEVQKHVEQEPELEVEVGPTLGVRITAPIRDPDCVSEEEEEQQPY
PALAPAAFFCLKQTTRPRNWCLRVVCNPWFEHVSMLVILLNCVTLGMFQPCEDVSCQSEW
CRILQVLDDCIFAFFAVEMVIKMVALGIFGPNCYLGDKWNQLDFVIVMAGVMEYSLDGHN
ASLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLW
AGLLRNRCFLGEDINTLYNLSISSYYMSEEGEDTPFICSAGRDNGMLRCYDVPPYAEGGA
ECSLPAPHLSSALIGSAPAVGGASVNGCVNWNQYYNTCRAGDFNPHKGAVNFDNIGYAWI
AIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRE
NALMREQRARYMSNDSTLASYSEPGSCYEEMLRYISHLYRKFTRRLQRIYSGWHSKRRKK
VNPNGSGGGSNGGGNGHGHGSSRGGVGAGPGNPLWLRPIHNLLQHHQHQHCRLSNGGQHT
PIVATTESAHGEGDIGGVEELEMKSLPVRRGSTNGNSGGNPSVVTQGMGALLGRLNGGMN
YPTILPSFVCSYSSKTPPPHSQHCGRSPDRHPPNHPASEHTETLNKLYQLMGQHSRQRLL
YQLAGVVPSPLLLELLSCPMCARSLETLELELGDLEGGRGEADGLHDFPQAGDLRGGRGR
SKRRVVVEYRNGAVRAWVGFREKLKRIVESKYFNRGIMIAILVNTLSMGIEYHEQPEELT
DVLEISNIVFTSMFVLEMGFMLLAFGLFGYIRNPYNIFDSIIVIISVWEIIGQADGGLSV
LRTFRLLRVLKLVRFLPALKRQLVVLIKTMDNVATFCMLLMLFIFTFSILGMHLFGCKFS
LQTDTGDTIPDRKNFDTLLWAIVTVFQILTQEDWNVVLYNGMASTSPWAALYFVALMTFG
NYVLFNLLVAILVEGFQAEGDANRSESDDEKKSDNFEEDEKVEQLRDTELKMYSLMMTAN
GHVDPRGSMAPPIIMRTAATPMPTPKSSLGPESVLGDELMYREGVSRYGEVGLGFSEAGI
GHVDSRRGSSTSMDPLAYDQRSLSHSSPGRRSPLPPRGSGSSWGSRRSSWNSLGRAPSLK
RRDTSGERESLLSGEGGEEEDSGEDKGEAGGNNRLRPGSLELLQASTLCPSIIAEYGDCN
GRTLNYDPNLNSDPKEDSSPEDDLDDDNSFGYWIKKELRSMKPRWCKEHEDWALYLFSPE
NRFRLWCQRVISHKIFDHVVLVFIFLNCITIALERPDIQSHSTERVFLSVSNYVFTVIFL
AEMTIKVVAHGFCFGKQSYLQSSWNVLDGLLVFVSLVDILVSLAYTGGNRILGILRVLRL
LRTLRPLRVINRAPGLKLVVETLITSLRPIGNIVLICCAFFIVFGILGVQLFKGKFYICE
GLDTKNITNKSDCLQASYRWIRRKYNFDNLVQALMSLFVLSCKDGWVNIMYDGLDAVGVD
QQPVRNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQDQEEEEARLREEKRLKM
IEKKRRSKENEGAEAKQRPYYADYSPIRLTIHTLCTSHYLDLFITFIICINVFTMSIEHY
NQPQYLEEVLKYCNYVFTIIFVIEALLKLLAFGIHRFFKDRWNQLDIAIVALSIMGITLE
ELKMSAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVMQALPQVGNLGLLFMLL
FFIYAALGVELFGKLECNDSNPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDTLR
ECRPEDQHCLSYLPLVSPIYFVTFVLMAQFVLVNVVVAVLMKHLEESNKEAKEDAEMDAE
IAMEMELERQQRKLSTTSNNSSGGGTYVGPCPHSPGEEEEVQHGDQDLLSSRKMSVSRMH
SLPNDSYMFRPVRPASAPYPLEEVNTSPQDQHSGSMTSVHSQPCESYALLQVPDISPVHP
RQLPSLTLPCIAPPTPSPSPRALRRQVAVKLDSVESQSCEQQERPTPVHLPPHSPSPLSP
LSPSPSPLPPPPPSSPSALSLPPCSPTAFPLPPPSPSLLPPLLSCPSPLPPLPPSPSLLL
PPPPPSPRLPLRPASLRRHRPPSAASLCDPADEEVYHITSSAQHMWGDEEGGGQESRGKA
GRSHSLSPYISPYSLDYSTFSPPPPPLPPSSSRSALSLLGAGLKGRDFRKGFSIDTQGLL
DKPSSLSAGYPDDQRRHSIEVCLPQAVITSDNQHFVEGVQRSEKSAQAFPVRVQSVGGGH
RKKKMSPPCISIHPPSEREHPKMGSPPKLADCSMMLRRRTPSYDLTPHIQSNTHTQDVSP
DTQMHRALTPIHVPLQAHSPTHTLTPSRASTPTRMQTYTPPHTSTPTHPHIPISPNIFIQ
PHAPLVPTTMPFSQTHSLSPSARHSSLTGDYIPLPQFTFDQPQSRYLSDTDTATCSSPFD
SRLGSSAGFSAKNRRTAQ
NT seq
7617 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggcgaggggagagtgcgctttcagtacgcagagtgccctgaggggcaggag
caggaggaggtgctggaggaggtgaggctcgctatacctacagcctaccggaatgacacc
cctggttgtgatgttgaccctggaggaggatgtgaccagcaagaggaaggggaggtggag
agaagaaggaaggggagtagagaaggaggtgaagctgaatggagtcctgaggttcagaag
catgtggagcaggaaccggagctggaagtggaagttggaccaacactgggagttcgcatc
acggctcccatccgtgatcctgactgtgtctcagaggaggaggaggagcagcagccgtac
ccggccctggccccggcggccttcttctgcttaaagcaaacaacaaggcctcgcaactgg
tgtctccgtgtcgtctgtaacccgtggttcgagcatgtgtccatgctggtgatcctgctc
aactgtgttactctagggatgttccagccctgtgaagatgtcagctgccagtcggagtgg
tgtcgcatcctacaggtattggacgactgtatctttgctttctttgcggtggaaatggtc
atcaagatggtggccctgggaatctttggccccaattgttaccttggtgacaagtggaac
cagcttgactttgtcatcgtcatggcaggggtgatggagtattctctggatggccacaac
gccagcctgtcagccatccgtactgtacgagtgctcaggccgctgcgggccatcaacaga
gtaccaagtatgcggatcttggtgacactgcttttggacaccctgcccatgctggggaac
gtcctcctcctctgcttttttgtctttttcatcttcggcattgtgggagtccagctgtgg
gcggggctactgcgcaaccgctgtttcctgggagaagacatcaacacattgtacaacttg
tccatcagttcttactacatgtcagaggagggtgaagacaccccatttatctgctcagca
ggccgagataacgggatgcttcgctgctacgacgtgccaccctacgccgagggtggggcc
gagtgttcgttgcctgctccccacctaagctcagctctgattggatcagctcctgcggtg
ggaggggccagtgttaacggctgtgttaactggaaccagtattataacacttgtcgtgca
ggggacttcaaccctcacaaaggagctgtcaactttgacaatattggctatgcttggata
gctatattccaggtcatcacactggaaggatgggtagatatcatgtactatgtcatggat
gctcactccttctacaattttatatattttatactactcattattgtgggctctttcttc
atgatcaacttgtgcctggtggtcatcgccacccagttctctgagacaaagcaaagagag
aacgctctgatgagggagcaacgtgctcgctacatgtccaacgactccacgctcgccagt
tacagtgaaccgggctcgtgctacgaggagatgctacgctacatcagtcacctttatcgc
aagttcacacgcaggctgcagaggatatactctggatggcacagcaaaaggcgtaaaaag
gtgaatccgaatggtagtggcggaggcagcaacggtgggggcaatggacatggccacggc
tccagcagaggcggtgttggcgcaggcccagggaacccattgtggctgagaccaatccat
aaccttttgcagcaccatcagcaccagcactgtcgcctcagcaacggggggcagcacaca
ccgatcgtggcgaccactgagtccgcgcatggagagggagatatcggaggagtggaggag
ctggaaatgaagtcacttcctgtaaggagaggaagtacaaacggaaatagcggcggcaat
ccatctgttgtcacccagggcatgggggcattgctcgggagactgaatggggggatgaac
tacccgaccattctgccatcttttgtgtgcagctatagcagcaagacaccacccccccac
tcccagcactgcgggcgcagtccagatcggcatccaccaaaccacccggcgtccgaacac
acagagacactgaacaagctctaccagctcatgggacagcacagtcgccagaggctgctg
taccagctggcaggcgtggtgcccagccctctgctcttggaactgctcagctgccctatg
tgtgcccgcagcctggaaactctggagctggaactgggagacctggagggaggcagggga
gaagctgatggcctgcatgacttcccccaggcaggagatctgagaggtgggcgaggtcgg
agcaaacggcgggtggtcgtggagtacaggaacggagcagttcgggcctgggtaggcttc
agggaaaaactaaagaggattgtggaaagtaaatacttcaaccgagggatcatgatcgcc
atccttgtcaatactctcagcatggggatagaataccatgagcagccagaggagctgact
gatgtgttggagatcagtaacatcgttttcaccagtatgtttgtcttggagatgggcttc
atgctgctggcttttggcttgtttggatacatcaggaacccatacaacatctttgacagc
atcatcgttatcatcagtgtgtgggagataattgggcaagcagatggtgggttgtcagtt
ttgcgtacgtttcgtctgctccgggttctgaagctggttcgtttcttacctgccctgaag
agacaacttgtagtgctaataaaaaccatggacaacgttgctacattctgcatgctgctg
atgcttttcatcttcactttcagtatactgggtatgcatctgtttggttgtaaattcagt
cttcagacagatactggagacactatccctgaccgcaaaaactttgacactctactctgg
gccatcgtcactgtattccagattctcacccaggaggactggaatgtggtgttgtataac
ggcatggcctctacctccccatgggcggctctctactttgttgctctcatgacatttggc
aactatgtgctcttcaatttactagtggccatcttggttgagggcttccaggctgagggt
gatgctaatcggtcagagtcagatgatgagaagaaatcggacaacttcgaggaagacgag
aaggtagaacagctcagagacaccgagctaaagatgtattctctgatgatgacagccaat
ggtcatgttgaccctcgtggctcaatggctcctcccataatcatgcgcacagcagccacg
ccgatgcccactcctaagagctctctgggacctgagtccgtccttggggatgagctcatg
tacagagagggggtgtctcgatatggtgaagttggactcggcttttctgaagcaggaatt
ggtcatgtagactctcgccgtggaagctccacctctatggatcccttagcctatgaccag
cgttctctgagccactcaagtcccggccggcgctctcctcttcctccccgcgggtctggc
agctcatggggtagtcgccgctccagctggaacagcctgggaagagcgccgagcctcaaa
agacgagacaccagcggagagagggagagcctactgtctggggagggaggagaggaggaa
gatagtggggaggacaaaggggaggctgggggaaacaacagactacgaccagggtctttg
gagctactgcaggcgtctactctctgcccttccataatagcagaatatggggactgtaat
ggaaggaccttgaactacgatcccaacctgaactccgaccctaaggaagactcttcgccc
gaggatgacttggacgatgataattcttttggctactggatcaagaaagagctccgtagc
atgaagccccgctggtgtaaagagcatgaagactgggcgctgtacttgttctctccagag
aaccgattccgtttgtggtgccaaagggtgatctcccacaaaatattcgaccacgtggtt
ctcgttttcatcttcctcaactgcatcaccatcgctctggaaagacctgatatacagtct
cacagcacggagcgagtgttcctgagtgtgtccaattatgttttcactgtgatctttctg
gcagagatgaccataaaggttgtagctcatggtttctgctttgggaagcaaagctacctt
cagtccagctggaacgttctggatggtttgttggtatttgtgtctctggtcgacattctg
gtctctttggcctatactggcggaaacaggatcctgggcatcctcagagtcttacgactg
ctacgaacactacgcccactgagggtgatcaatcgagccccaggactaaagctagttgtg
gagactctcatcacctcacttagacccattgggaacattgtcctgatctgctgcgccttc
ttcattgtctttggcattttgggggtgcagctgttcaaagggaagttctacatctgtgaa
ggtctggacacgaaaaatataaccaacaagtcagactgtttgcaagccagttaccgctgg
ataaggaggaaatacaactttgacaacctggttcaggccctgatgtctttgtttgtgctg
tcctgtaaggatggctgggtaaacatcatgtatgatggcctggatgcagtgggagtggac
cagcagcctgtgaggaaccacaacccctggatgctgctctactttatctccttcttgctc
atcgtcagcttctttgtcctcaacatgtttgtcggtgtcgtggtggagaacttccacaag
tgtcggcaggaccaggaggaggaggaggcccgcttacgggaagagaagaggctcaaaatg
atagagaaaaagcgcaggagtaaggagaatgaaggggctgaggccaagcagaggccttac
tatgcggactactctcccatacgtctcaccatccacacactgtgtaccagccattacctg
gacctcttcatcaccttcatcatctgcatcaatgtcttcaccatgagtattgagcactac
aatcagccgcagtatctagaggaggttctgaagtactgtaactacgtgtttaccatcatc
ttcgtcatcgaggccctgctcaagcttttggcattcggtatacacaggttcttcaaagac
aggtggaaccagctggatatagctatagtggcgctgtctatcatgggcatcaccctggag
gagttgaaaatgagtgcagcactgcccatcaatcctaccatcatcagaatcatgagagtg
ctcaggatagcacgagtactaaaactcctcaagatggccacagggatgagggctctgctg
gatactgtcatgcaagcgctgccacaggtgggaaatcttggtctcctcttcatgctgctc
ttcttcatctatgctgcacttggagtggagctttttggcaaactggagtgtaatgacagc
aatccatgtgagggtctgagtcgtcatgcaacctttgagaattttgggatggccttcctc
acactgtttagagtgtccaccggagacaactggaatgggattatgaaagacacgttacgg
gagtgtcgtccagaagaccagcactgtctcagctacctgccattggtctctccaatttac
tttgtcacctttgtgctcatggcacagtttgtgctggtcaatgtggtggtagctgttctg
atgaaacacctagaggaaagtaacaaggaagctaaagaggatgcagagatggatgcagag
atcgccatggaaatggaactggagagacaacaacgcaagttaagcacaacctccaacaac
agctcagggggaggaacctatgttgggccatgcccacattcacctggagaggaggaagag
gtgcaacatggagaccaggacctgctgtcttcaaggaagatgtctgtatccaggatgcac
tctctgcccaacgacagctacatgttccgacctgtacggcctgccagcgccccctaccct
ttggaggaggtgaataccagtccccaggaccagcattcaggatcaatgacgtcagtccac
tcccagccatgtgagagttacgctctgctacaggtaccagacatttccccagttcaccct
cgccaacttccctccctcaccctgccctgcatcgccccacccacacccagcccctcccca
cgggccctgcgcagacaggtggcagttaaattggattctgtagagtcacagagttgtgag
caacaagaaaggcccacccctgtccatctgcctccccactccccttctccactttctcct
ctttccccatccccatctcctctgcctccgccacctccttcctccccctctgccctctct
ctcccaccatgttcccctactgccttcccactccctccaccctccccgtctctcctccct
cctctactgtcttgcccttctcccctccctcctctgccgccttccccctcacttcttcta
cctcctcctcctccctcaccgcgtctcccgttgcgccccgccagtcttcggagacataga
cccccctctgctgcctccctctgcgacccggcagatgaggaagtgtatcacatcaccagc
tcggcgcagcacatgtggggagatgaggagggaggtgggcaggagagcagagggaaggct
ggccgcagtcactccctctccccttacatctccccgtactctctcgactactccaccttc
tcccctcctcctccaccgctgccaccttcttcctcgaggagcgcactcagtctgcttggg
gcggggctgaagggccgtgactttcggaagggctttagcattgatacccagggtttactg
gacaagccgtcatcattgtctgctggttaccccgacgaccagcggcgccactccatcgag
gtctgcctaccacaggctgtcatcacaagtgacaaccaacactttgtagagggggtccag
cggtcagaaaagagtgctcaggcttttcctgtgagggtgcagtcagtcgggggtggccac
agaaagaagaagatgagccccccttgcatttccattcacccaccatcagagagggagcac
ccaaaaatgggctcacctccaaaactggctgactgcagcatgatgctgagacgaaggaca
ccgtcctatgatttgaccccacacatacagtcaaacacacacacacaagacgtctcgcca
gatacacagatgcaccgagcgctcacacctatccatgtaccactgcaagcacactcacca
actcacacgctgacaccctcgcgggcctccacaccgacacgcatgcagacatacactcca
ccgcacacatccacaccgacacacccacacattcccatcagcccaaacatctttatccaa
cctcatgcacctcttgtcccaaccactatgcctttctcacagacacactccctctcgcct
tctgcaaggcactcctctctcacaggggactacatccccctcccccaattcacctttgat
caaccacagtccagatatctgtcagacaccgatacagccacttgctcttccccttttgac
agcagacttggaagcagtgctggattcagtgcaaagaatcggaggaccgcccaatga
DBGET
integrated database retrieval system
