Scomber japonicus (chub mackerel): 128378297
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Entry
128378297 CDS
T09718
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128378297 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sjo03041
]
128378297 (ddx5)
03009 Ribosome biogenesis [BR:
sjo03009
]
128378297 (ddx5)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128378297 (ddx5)
Spliceosome [BR:
sjo03041
]
Complex A
U1 snRNP components
U1 related factors
128378297 (ddx5)
Complex B
128378297 (ddx5)
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
Pre-60S particles
Helicases
128378297 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128378297
NCBI-ProteinID:
XP_053193740
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All DBs
Position
18:9326659..9332479
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AA seq
624 aa
AA seq
DB search
MPGYADRDRGRDRDRDRDRGYGGGPPRFGGNRGGGGGGGGKFGNPGDRLRKKHWNLDELP
KFEKNFYQQHPDVARRSLQEVEQYRRSKTITVKGRECPNPIQKFHEASFPSYVMDVINKM
NWTEPTPIQAQGWPLALGGNDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLV
LAPTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL
EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED
FLKDYVQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKR
RCDDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKF
VINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLISVLREANQAINPKLL
QMGEVRGGRSRGGRGGDYRDDRRDRYSSGRRDFGNFRDRDSSRGFDGPNKAFGANSQNGG
YGSSNSGSNGFSGGSYNGNGQSNFNSQTGSFGAQNNFQAPQFAPNKGGAQNGASHPPFPF
PQAQAPQHPPPPLVPYPMPPQFTQ
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgccaggatatgccgacagagaccgtggcagggaccgtgacagagacagagacagaggc
tatggcggtggtcctcctcgctttggtggcaaccgtggtggtggtggcggcggcggaggg
aagtttggcaatcccggcgatcggctgcggaagaaacattggaacctggacgagctcccc
aagtttgagaagaacttttatcagcagcatcctgatgttgcccggaggagtctgcaagaa
gttgaacagtacaggaggtccaaaacaattacagtgaaggggagagagtgcccaaatcca
attcagaagttccacgaggccagctttccatcctatgtaatggatgtgattaacaaaatg
aactggactgaaccaacacccattcaggctcagggctggcctctggctctcgggggcaat
gatatggttggcattgcacagacaggctctggcaaaacactttcttatcttttgcctgca
atcgtccacatcaaccaccagcctttcctggaacgtggagatggtcctatttgcttggtg
ctggccccaacccgtgagctagcacagcaggtgcaacaggtggctgcagaatatggcaga
gcttctcgcctcaagtccacctgtatctacggaggagcacccaaggggccccagatccgt
gaccttgaaagaggtgtggagatctgcatcgccaccccaggcaggctcattgatttcctt
gaggcaggaaagacaaacctccgtcgctgcacttatcttgtactggatgaggctgacaga
atgctggacatgggttttgaaccacagatcaggaaaattgtcgaccaaatcagacccgac
cggcagactctgatgtggagtgccacttggcccaaagaggttcggcaactggctgaggac
ttcctgaaggactacgtgcagatcaatgttggtgctctgcagctcagcgccaaccacaac
atcctacagatagtggatgtctgcaacgatggcgaaaaggagaacaaactcatccgtctg
cttgaggaaatcatgagtgaaaaggagaacaagaccatcatctttgtagagacaaagagg
cggtgtgatgacctcaccaggaggatgaggagggatgggtggcccgctatgggaatccat
ggagataaaagccagcaggaaagagactgggtactcaatgagttcaaatacggaaaggct
ccgattctcattgctacagatgtcgcctccaggggtctagatgtggaagacgtgaaattt
gtcatcaactttgactaccccaacaactctgaggactatatccatcgcattggcagaacg
gcacgtagccaaaagacaggcacggcctataccttcttcactccaaacaacatgaggcag
gccagcgacctcatctctgtgctccgcgaggccaaccaggcaatcaaccccaagctcctc
caaatgggggaagtcagaggagggcgttcaaggggcggcagaggtggtgactacagagat
gaccgccgggataggtattcttcgggaagacgtgactttggcaattttagggaccgggat
agcagtagaggttttgacggaccaaataaagcctttggcgcaaattcacagaacggaggc
tatgggagcagtaacagcggctccaatggcttcagcggtggcagctacaatggtaatgga
cagtccaactttaacagccaaacaggatccttcggagcccaaaacaacttccaggccccg
cagttcgcccccaataagggtggcgcacagaatggcgcaagtcatccccctttccccttc
ccccaggcacaggctccgcagcatcctcccccaccgctggtgccctaccccatgcctcct
cagttcactcagtaa
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