Scomber japonicus (chub mackerel): 128378310
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Entry
128378310 CDS
T09718
Symbol
smurf1
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04120
Ubiquitin mediated proteolysis
sjo04137
Mitophagy - animal
sjo04144
Endocytosis
sjo04340
Hedgehog signaling pathway
sjo04350
TGF-beta signaling pathway
sjo04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128378310 (smurf1)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
128378310 (smurf1)
04350 TGF-beta signaling pathway
128378310 (smurf1)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
128378310 (smurf1)
04137 Mitophagy - animal
128378310 (smurf1)
09144 Cellular community - eukaryotes
04520 Adherens junction
128378310 (smurf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128378310 (smurf1)
04121 Ubiquitin system [BR:
sjo04121
]
128378310 (smurf1)
03029 Mitochondrial biogenesis [BR:
sjo03029
]
128378310 (smurf1)
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
128378310 (smurf1)
Membrane trafficking [BR:
sjo04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
128378310 (smurf1)
Autophagy
Mitophagy
Other mitophagy associated proteins
128378310 (smurf1)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
HECT type E3
128378310 (smurf1)
Mitochondrial biogenesis [BR:
sjo03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
128378310 (smurf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
128378310
NCBI-ProteinID:
XP_053193759
LinkDB
All DBs
Position
18:complement(10708839..10726833)
Genome browser
AA seq
740 aa
AA seq
DB search
MSNPGTRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKTDSITISIWNHKKIHKRQGAGFLGCIRLLSNAISRLKDTGYQRLDLCK
LNPSDSDAVRGQIVVSLQTRDRIGSGGPVVDCRGLLENDGPVFEGCFSEEPLPYSDPTGA
AGGGNCRLDSPSQEGRLQSQRIRGQDSRGHGHTPQNRPHGHQPPDLPEGYEQRTTVQGQV
YFLHTQTGVSTWHDPRIPRDLASVSCEELGPLPVGWEVRSTVSGRIYFVDHNNRTTQFTD
PRLHTIISQQSQAKDSSQAPQMEVGGEEGGGGGVGGGGGGGDGDVAARYERDLVHKLKLL
RHELSLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVAR
EWLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRVMGLAVFHGHY
INGSFTLPFYKQLLGKPIQLNDLETTDPELHKSLVWILENDITSVLDHTFCVEHNAFGKF
LQHELKPNGRNIPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFSELIPQHLLKPFDH
KELELIIGGLGKIDLADWKTNTRLKHCTSESNVVRWFWQAVEAFSEERRGRLLQFVTGST
RVPLQGFKALQGGSCTGSESTQSHASITVIIGGAQCQFKCASLECLHPTFILSYTLITCS
CTLYTLESVVTSFKKTWPES
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcccgggactcggaggaacgggtccagcatcaaaatccgactgacagtatta
tgtgccaagaacctcgcaaagaaagacttctttcgcctgccagatccatttgccaaggta
gtggtggacggatcaggtcaatgccactctacagacacagtcaagagcacactggacccc
aaatggaatcagcactatgacctctacatcggaaagacagattcaatcacaatcagtata
tggaatcacaagaagatccataaacgacagggggcaggcttcttgggctgtatacgactt
ctttccaatgccatcagcaggctaaaagacacaggataccagcgactagatctatgtaaa
ctgaacccctcggacagcgacgcagtgcgggggcagatagtagtgagcttacagacgcga
gaccgcatcggcagcggaggccccgtggtggactgcagaggactgttggaaaatgatggg
cctgtgtttgaaggatgtttcagcgaggagccgcttccctattccgaccccaccggtgcg
gcggggggcgggaactgccggcttgactcacccagtcaagagggccgtcttcagtcgcag
cgaatcagagggcaggattccagaggacacggccacacccctcagaacagacctcacggg
caccaaccgcctgacctcccagagggatacgagcagcgaacaacagtgcagggccaggtg
tacttccttcacacacagacgggcgtcagcacctggcacgaccctcggataccgcgggac
ctggccagtgtgagctgtgaggagcttggtccgctgccagtgggctgggaggtccgaagc
accgtgtctggccggatctactttgtcgaccacaataaccgaaccacacagttcacagac
ccgcgcctgcacactattatcagccagcaatcccaagcaaaggactcctcccaagccccc
cagatggaagtggggggcgaagaagggggaggcggaggagtgggcggcggcggcggagga
ggagacggagacgtggcggcgcgctacgagagagatctggtccataaactgaaactgctc
cgccacgagctgtccctccagcagccgcaagcgggacactgtcgcattgaagtgtcccgc
gaggagatctttgaggagtcgtacaggcagataatgaagatgaggcccaaagacctaaag
aaacgtctcatggtgaagttccggggagaggagggtctggactatggtggtgtggccagg
gagtggctttacctgctgtgtcatgaaatgttgaacccctattacggcctgttccagtac
tccacagacaatatttacacactacagatcaaccccgactcctccatcaaccccgaccat
ttgtcatacttccattttgtgggccgcgtcatgggcctggctgtttttcacggtcactac
atcaacgggagcttcacgctacccttctacaaacagctgctgggcaaacccatccagctc
aacgacctggagaccaccgacccagagttgcacaagagcctcgtgtggatattagagaac
gacatcacttcagtcctcgaccacacattctgcgtggagcacaatgccttcgggaaattc
ctacaacatgagctcaaacctaatgggcgtaatatccctgtcactgaggagaacaagaag
gaatacgtaagactttatgtgaactggaggttcatgaggggaattgaagcccagtttctg
gctcttcagaagggcttcagtgagctcatcccccagcacctcctcaaaccttttgaccat
aaagaacttgagttgatcatcggcggactgggaaagatcgacctcgcagactggaagacg
aacacgcgcctgaagcactgtacaagcgaaagcaacgtggttcggtggttctggcaagcg
gtggaggccttcagcgaagagaggagaggacgcctgctgcagttcgtcacgggctccacc
agagtccctttgcagggattcaaagcgctgcagggtgggtcatgcactggttcagagtcc
acacagagtcacgcatcaattactgtcattattggtggtgctcaatgccaattcaagtgt
gccagtttagaatgcctgcatccaacatttatattgtcttacacactcataacctgcagc
tgcacattatacacattagaatctgtagttacttcatttaagaaaacatggcctgaatca
tag
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