Scomber japonicus (chub mackerel): 128378443
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Entry
128378443 CDS
T09718
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X2
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sjo03036
]
128378443 (chd9)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
128378443 (chd9)
BRITE hierarchy
Motif
Pfam:
SNF2-rel_dom
BRK
Helicase_C
Chromo
ResIII
Motif
Other DBs
NCBI-GeneID:
128378443
NCBI-ProteinID:
XP_053171146
LinkDB
All DBs
Position
1:complement(12301830..12377413)
Genome browser
AA seq
3026 aa
AA seq
DB search
MDFFDDPNLFVGGLDGLDEEGFPSAPSLVDELNLSADFEPLQVEPLGTGKHQDMIPPVSS
TSAQQAMPTYSHQMGHYIGLKAQNPMGQAFPGQGGTVGGDGGMIAEQHGQYHNATITQVP
QSNGLFCNSSSPMWGNQDQNGNMYHPLSQQQQQLCHQQQQQQQLHNQQIHVRQQQTQQQH
HPCHQQQQQQQHRLRQQLQQQQSHQQQLLNQRQHQQLNTQTMSLQQQQHHNFSFHQGSQT
QSQQQVHHSQQQVPHQLSVGGPRFHSRALSTKSYLDSQNASLSGTCLQQQQQQGSYQLNR
AGQAFSGSGLEDRNLPFPMHSSSVVHSLPTYSVSSTTNYQPAQYPAYPGEPEIASLSQQS
LSSASVSRPTTIAAPLTSTVPELSGTVCQFPSTSVMGQQHARTPVSQAEECPFRALRCSG
ETQGSCKSSEMFGESMSCYASIASHLPSEQPQSCGAINTNGFQALGDSLLPSGAQDGDLE
GLEPPDLLPDLLPQLEAALSQQDESNCSWADSSQERGHERRKSPPVENKDEKPRKNTNGP
GSQVRVLSPPMKSSSSSSSSSSSSSSSSSSSSEKRTSRRTHHQMESMHLEKQEKANRIIS
EAIAKARQRGEKNIPRVMSPESFPSSSSQYKTHRDREHKGNGKARPKEKACRKACIVPSS
KTKQKAKIGKIVIKIGKKKKRKPPSSEEESDDDRPPRHTSKDIDSKRRSNRQVKRKKYAE
ELEARLSDEEVKVIVKAKKTNTAASKQPAVQLFVENPTEEDAAIVDKIMSSRIVKKEVSP
GVVVEGEEFFVKYKNYSYLHCEWATEQQLEKDKRIPQKIKRFKMKQAQRALFFADMEEDP
FNPDYVEVDRVLEVSYCEDKDTGEEVVYYLVKWCSLPYEDSTWELKDDVDQSKIEEFEQL
QAAKPDSCRVERPPANLWKKREQSREYRNSNSLRDYQLEGVNWLLFNWYNRRNCILADEM
GLGKTIQSITFLEEIYRAGIKRPFLIIAPLSTIANWEREFHTWTHLNVIVYHGSMVSRQM
LQQYEMYFRDAQGRVIRGAYKFQALITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNC
KLLEGFKLMSLEHKVLLTGTPLQNTVEELFSLLHFLEPARFPSENTFMQEFGDLKTEEQV
QKLQGILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQ
ANMPNLVNTMMELRKCCNHPYLIKGAEEKILEDFREVYSPTAIDFHLQAMVQSAGKLVLI
DKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKP
DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLI
TRNSYEREMFDRASLKLGLDKAVLQSMSGRDNSLGGGTGGGAVQQQLSKKEIEDLLRRGA
YGAIMDEEDEGAKFCEEDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDP
NFWDKWAKKADIDVDMVNGRNSLVIDTPRVRKQTRPFSATKDELAELSEGESDNDETKPK
LRRNHDRLNSYGRTECFRVEKNLLVYGWGRWKDILNHGRFKKQLTEWDVEAICRALLSYC
LVHYRGDDKIKSFMWDLIAPTEDGRTKELQNHLGLSAPVPRGRKGKKMKTQSSSFDIHKA
EWLRKHNPEHMLQDDGYKKHLKHHCNKVLLRVRMLYYLKQEVIGSQAQQVLDGVDASEIK
IWVPEPDHSDLPTLWWDTISDKCLLLGIYKHGYEKYNTIRADPTLCFLDRVGRPDEKAIA
AEQRGNDFMDGDVDDPEYKPAPALLKDEMEDDASSPGDLVVTDNAGDAVPVTDGQSQSIY
WPSSSVLTARLRRLITASQRFTKSRQILHIHQSQSQSQSQQTMIMSAPLCPLPPTLNDTI
NPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPDLGRFDWTKFRAMARLHKKTDESLQ
KYLCAFTAMCRQVCRLPPKEGDSAVDPALTIQPITEERASRTLYRVELLRQVREQVLRQP
LLYERLSLCQMSSDLPVWWEAGTHDRDLLIGAAKHGVSRTDYHILRDPELCFMAAQRNYS
QTKAAQQQSRTSTPLLHPQYQATSSAMTGSPLAPPAPRDPEPCGVVPKVEPASEGEEIRE
KQGESWSPPRAPATPTGLEEKPISDVRDSERQMVAARTKPLTPNSSERKPKKASKRGRRE
ARRGSESDSDGSSSSSSSRSSSSSSSSSSSSSHSGSSSSSSSSSCSSGSSSSSSSSSSSS
DDSESEGEEGKKKVPVATSVKGFDEDSVASLSTTQDETQDTHVAENGIANNSSHPFQGGG
YMLAASYWPKDRVIINRLDSICQAVLKGKWPGTRRVYEPGGAVASFYTTKLLDNANSLCE
DPSASPQGSKVTKHVAENKEFSVKLNDQEGGLKLTFQKQGLPLKRPLETEEGPQAQQQYL
ARLQELQSASDTGLADITKPHCSFQSVPPVVAGQMRLNGIADGQPVVKRRRGRRKNVEGM
DLLFMNKSRVPAVPDQVPPGWGGIGQVGMAAAAVPGFSQNSSQCPADTEMRVSVINLKDG
TRLAGEDAPKRKDLEQWLKEHPGFVADTGAFIPGVNKMQMQFHFQDGRPKQKRHRCRNPN
KIDVNSLTGEERVQIINRRNARKVGGAFAPPLKDLCRFLQENPEYGVPPEWADVVKQSGY
LPESMFDRILTGPIVPEEVSRRGRRPKNPLAKAAAAATAAAAPNPTASALGLNPLLANGL
LSGMDLTSLQAFQQNLQSLQSLQLTAGLMGLPSDASNLAASNLAAMFPMMLSGMAGLPNL
LNMSSLLGKPAQEGAAGSEDKAKGTASGGTGEASASKAPSNTSDTKGERTEGLNTTPSST
YSATSSATAPQSASAASAASSHPLSLNPLLLSSMIYPGMLLTPGLNLPVSATQPQSSNSD
PTPPAASQSSPLETQRPAAEKDREEDEDDEVLEEEEEDDDDDDDDEESAEQKENSGPEGL
GKVESSSSESGSSSSSSDNSDSSDED
NT seq
9081 nt
NT seq
+upstream
nt +downstream
nt
atggacttctttgatgaccctaacctctttgttggaggtttggacgggctggatgaagaa
ggtttcccctcagcaccgtcactagtggatgagctaaatctcagtgctgactttgagccc
cttcaagtggagcctctagggacagggaagcaccaagacatgataccgccagtttcttcc
acatctgctcaacaagccatgcccacttacagtcatcagatgggccactacattggcttg
aaggcacagaatcctatggggcaggcatttcctggtcaagggggcacagttggtggagat
ggtggtatgattgcagagcaacatggccagtaccataatgccaccatcactcaagtacct
caatccaatgggctgttctgtaacagtagcagtccaatgtggggcaaccaggaccagaat
gggaatatgtaccaccccttatctcaacagcagcaacagctttgtcatcagcagcaacag
cagcagcaactgcacaaccagcaaattcatgtaagacaacaacaaacacagcagcaacac
cacccctgtcatcagcagcaacagcaacagcagcacagactacggcagcagctgcaacag
cagcaaagtcatcagcaacagctgttaaaccagcgccagcaccaacaattgaacacacag
actatgtccctgcagcaacagcagcatcataatttctcctttcatcagggaagtcaaact
cagagccaacagcaagttcaccatagtcaacagcaggttccacaccagctaagtgtagga
ggaccaaggtttcattcaagggctctgtcaactaagtcctatctggatagtcaaaatgct
tctctgtccggcacttgcttacagcagcagcagcagcagggtagctaccagttgaacagg
gcaggtcaagccttctctggatcaggcctggaagaccgtaacctgcccttccccatgcat
tcatcgtcggtggttcactccctgcccacatactcagtcagttctaccaccaactaccaa
cccgcgcagtaccctgcctaccctggagaaccagaaatagccagtcttagtcagcagtct
ttgtcatcagcatctgtgtctaggcccaccaccattgctgctcctctcacttctacagtg
cctgagctctcagggacggtatgtcagtttccatccacttcagttatgggtcagcagcat
gctaggaccccggtcagccaggcagaggaatgtcctttccgtgctttacgctgttctgga
gaaacccagggaagctgcaagtcttctgagatgtttggtgaatctatgagctgctacgcc
agcatagccagtcatctgccctctgagcagccacagagttgtggggccatcaacactaat
ggatttcaagctttgggagacagcctcctgccatcaggggctcaggatggggacttggag
gggttggaacctcctgacctcctccctgacttactgccccagctggaggcagctctcagc
caacaggatgaatccaactgttcgtgggctgattccagccaggagagaggacatgagcgc
agaaagtcaccacctgttgagaacaaggatgaaaagcctcgaaagaacactaatggtcct
ggtagccaggtacgggtcctcagtcccccaatgaagagcagctcatcatcctcctcctct
tcctcatcatcttcatcctcatcaagctcctcgtcggagaagaggacctcgcggaggacg
catcatcagatggagtcaatgcatttggagaagcaggagaaggccaataggataatatca
gaggcaattgcaaaagctcgtcagcgcggtgagaagaacatccccagagtcatgagccct
gagagcttccccagctcttcctctcagtacaagacccaccgggaccgagagcataaagga
aatggcaaggcaagacccaaagagaaggcctgtaggaaggcctgcattgtaccttcctcc
aagaccaagcagaaggccaagatcgggaaaattgtcatcaagattgggaagaaaaagaaa
agaaagccaccgtcttcagaggaggagtctgatgatgaccgtccacctcggcatacttct
aaagacattgactcgaagaggcgatctaatcgccaggtgaaaaggaagaagtatgctgaa
gagctggaggcccgcctgtcagacgaggaagtcaaggttattgtcaaagccaagaaaacc
aacaccgcagcatccaagcagcctgctgttcaactctttgtagaaaatcctactgaggaa
gatgccgctattgttgacaaaatcatgtcctctcgtatcgtcaagaaggaggtttctcca
ggagtggtggttgaaggggaggagttttttgtaaaatacaaaaactactcctatctacac
tgtgagtgggccacagagcagcagctggagaaggacaagaggattccgcagaagatcaaa
cgcttcaagatgaaacaagcacagagggcactcttcttcgcagatatggaggaggaccct
tttaaccctgactacgtagaggtggacagagtgctggaggtgtcgtactgtgaggacaaa
gacacgggggaggaggtggtgtactacctggtgaagtggtgctctctgccttatgaagac
agcacctgggagctgaaggacgacgtagatcagagcaagattgaagagtttgagcagctg
caggcagccaagccagactcatgcagagtggagcgacccccagccaatctgtggaagaag
agggagcagtcgagggaatacaggaatagcaacagcctcagggactaccagctagagggg
gtcaactggctcctcttcaactggtacaacagacggaactgcatcctggccgacgagatg
ggcctgggaaagaccatccagtccatcacattcctagaagaaatctatcgcgcaggcatc
aagaggccattcctcatcattgccccactctccaccattgccaactgggagcgcgagttc
catacttggacccatctcaatgtcattgtctatcacgggagcatggtcagcaggcagatg
ctccagcagtatgagatgtatttcagggatgcacagggccgtgtgatacgaggtgcctac
aagtttcaggctcttatcaccacatttgagatgatcttgggaggctgccctgagctcaac
gccatagagtggcgctgtgttatcatcgatgaggcccaccgcctcaagaacaagaactgc
aagctgctagaaggcttcaagctcatgagtctggagcacaaggtcctgctgacgggcact
ccgctccaaaacacagtggaggagcttttcagcctgctccacttcctggagcctgcacgc
ttcccctcagaaaacaccttcatgcaggagtttggagacctcaagactgaggagcaggta
caaaagcttcagggtatcttaaagcccatgatgctgcgccggttgaaggaggacgtggag
aagaagttggcccctaaagaagaaaccattatagaggtcgagctcaccaacattcagaag
aaatactaccgtgccatcctagaaaagaacttctctttcctggctaaaggagctggccag
gcaaatatgcccaacctggtcaacacaatgatggagctgcgcaagtgctgcaaccacccc
tacctcatcaaaggagcagaagagaagatcctagaggacttcagagaggtgtatagccct
actgccatcgactttcacctgcaggctatggtgcagtctgctgggaagctggtccttatt
gacaaactgttgcctaagatgaaggccggagggcacaaggtgctcatcttctcccaaatg
gtgcgctgcctggacatcttggaagactacctcattcagagaaggtacttgtatgagcgg
atcgatggacgtgttcgtgggaacctgcggcaggctgccatcgaccgcttcagcaagcct
gactcagaccgcttcgttttcctcctgtgtacaagagctggaggcctgggaatcaacctc
acagcagcagacacctgcatcatctttgactctgactggaacccgcagaacgacctgcag
gcccaggctcgctgccatcggatcggtcagaacaaggcagtaaaggtgtaccgtctgatc
accaggaactcgtatgagcgggaaatgtttgatcgtgccagcctcaagctgggcttggac
aaagcagtgctgcagagcatgagtggccgagataacagcctgggaggaggtaccggggga
ggggcagtgcagcagcagctatctaagaaggagatcgaggatctgttgcgacgtggtgct
tatggggccatcatggatgaggaggatgaaggggccaaattctgtgaggaggacattgac
cagatcctccagcgcaggacaaagaccatcaccattgagtctgagggacgaggatccacc
tttgcaaaggccagttttgtggcgtccggaaaccgcacagacatctctctggatgacccc
aacttctgggacaagtgggccaaaaaggctgacatcgatgtggatatggtcaatggcaga
aacagcttggttattgacactccccgtgtcagaaagcagactcgacccttcagtgccacc
aaggatgagctggcagagctttctgaaggtgaaagtgacaacgatgagaccaaacctaaa
ctcaggcgaaaccacgatcgcctcaacagctacggacgcacagagtgcttcagagtagag
aagaacctgcttgtatatggctggggtcgttggaaggatattctcaaccatgggcgtttt
aagaagcagctgacagagtgggatgtggaggccatctgcagggccctgctgtcctactgc
ctggttcattatcgtggagacgacaaaatcaaaagcttcatgtgggacctcattgctcct
actgaagacggacgcactaaggagctgcagaatcacctgggtttgtctgctccagtcccc
cgaggcagaaagggtaagaagatgaagacacagtccagctcttttgacatccacaaggca
gagtggctaagaaaacacaacccagagcacatgcttcaggacgacggctacaagaaacac
cttaaacatcactgcaacaaggtgctgctcagggtcagaatgctctactacctgaaacag
gaggtgataggaagccaggcccagcaggtactagacggcgtggacgcaagtgagataaag
atctgggtgccagagcctgaccattctgacctgccaaccttgtggtgggataccatctct
gacaagtgtctgctgctgggtatctacaagcatggttatgaaaagtacaacactatccgt
gcagaccctaccctgtgcttcctagaccgtgtgggacgaccagatgagaaggccatcgct
gccgaacagagaggcaatgatttcatggatggcgatgtagatgatccagaatacaagcct
gctccagccctgctgaaggacgaaatggaggatgatgcttcttctcctggagacttggtt
gtcactgacaacgctggagatgcagttccagtgactgatggtcaaagtcaaagtatctac
tggccctcttcctcggtactgacagccaggctgaggcgtctgatcacagcttcccagcgc
ttcaccaagagccggcagattctccacatccaccaatctcagtctcagtctcagtctcag
cagaccatgataatgtctgctccgctctgcccgctgccccccacactcaacgacaccatt
aaccccaagatggctgctaagatcgaacgccaacaaagatggaccaggcgagaagaggct
gacttctatcgggtggtctccacttttggtgttgtttttgacccagacctcggccggttt
gactggaccaagttcagggccatggctcggctgcacaagaagactgacgagagcctgcag
aaatacctttgtgctttcaccgccatgtgcaggcaggtgtgtcgcctgccacccaaggaa
ggagactccgcagtggacccggctctcaccatccagcccatcacagaggagcgagcgtct
cgcacactgtacagagtagagttgcttcgccaggttagagagcaggtccttcgtcaaccg
ttactctatgagcgcctgtcactgtgccagatgagctctgacttacctgtgtggtgggaa
gctggtacccatgaccgtgacctgctaattggcgctgccaagcacggtgtcagccgcaca
gactaccacattctccgagaccctgagctctgcttcatggctgcccagcgcaactacagc
caaacgaaagctgcacagcagcaatcacgcacatccacaccgctcctacaccctcagtac
caggccaccagctcagcgatgacaggctctccactggctccacctgccccgagagaccca
gagccctgtggagttgtacccaaagtggaaccagcctcagagggggaggaaatcagggag
aagcaaggggagagttggagtcctcccagagcgccagctactcctacaggtctggaggag
aagcctatttctgacgtgagggacagtgagaggcagatggtggcagcaagaacgaaacct
ctcactcccaactcctcagagaggaagcccaagaaggccagcaagaggggccgcagggag
gccaggcgtggctcagagtccgactcagatggctcctcctcaagctcttcatcacgctct
tcttcctcttcatcatcttcatcttcttcctcatcacattccgggtccagctcttcctct
tcttcatcgtcttgctcctctggctcttcatcctcatcctcttcttcctcatcctcttct
gatgacagtgaaagtgagggagaggaaggaaagaagaaagtgcctgtagcaacaagtgta
aagggctttgatgaggacagtgtggcgtctctgagcactacacaggatgaaacacaagac
acccacgtggctgagaacggcatcgccaacaactcctcgcatcctttccagggaggaggg
tacatgctcgctgcatcttactggccaaaggatcgagtgataatcaaccgcctggacagc
atctgccaggcagtgctaaagggcaagtggccaggaacacgccgggtctacgaacctgga
ggtgcagtggcctccttctacaccaccaagctgctggacaacgccaacagcctgtgcgag
gacccctctgcctcgccacaggggtcaaaggtgaccaagcatgttgcagaaaacaaggag
ttctcagtaaaactgaacgatcaggaaggaggtctgaagttgaccttccagaaacagggt
ctccctctaaagaggcccctggagacagaggagggtccccaggcgcagcagcagtacctg
gcccggcttcaagagctgcagagtgcctcggacacaggcctggcagatatcaccaagcca
cactgcagcttccagagcgtgcccccagttgtcgctggtcagatgaggctgaatggaata
gcagacggtcagccagtggtaaagaggcgaaggggaaggaggaagaatgtggaggggatg
gacctgctcttcatgaacaagagtcgagtccctgctgtccctgatcaggtgcctccaggt
tggggtggtattggccaagttggcatggctgcagccgctgtgccgggcttcagccagaac
tcgagtcagtgccctgcagacacagagatgagggtctctgtcatcaacctcaaagatggc
acccggcttgctggggaggacgctcccaagaggaaagatctggaacaatggctgaaagag
catcccggttttgtggcagacaccggagcctttatccctggggtaaataagatgcaaatg
cagttccacttccaggatggccggcccaagcagaagaggcaccgctgtaggaaccccaac
aagatcgatgtcaacagcctgacaggagaggaaagagtccagatcatcaacaggagaaac
gcacgcaaggtcggcggagcctttgctcctcccctgaaggatctgtgccggttccttcag
gagaacccagagtacggagtcccacctgaatgggcagatgttgtcaagcagtcgggttac
ctcccagagagcatgtttgacaggatcctgacaggacccattgttcctgaggaggtgagc
cggcgtggacggcgacctaagaaccctctggccaaggcggcggcagcagcaacagcggca
gcagcacccaacccaacagcctctgccctgggcctgaaccccctgttggccaacggcctt
ctctctggaatggacctaaccagcctgcaagccttccagcaaaacctgcagagtttacag
tccctgcagctcaccgcaggacttatggggcttccatccgatgcaagcaacttggccgca
agtaacttagctgccatgtttccgatgatgctgtctggtatggcaggattgccgaacctg
cttaacatgagcagcttgcttgggaagcctgctcaggagggtgcagcgggatctgaggac
aaggcgaagggaactgccagcggtggaacaggagaggcgtctgcctccaaagccccctct
aacacctcagacaccaaaggagaaaggaccgagggcttgaacacaactccttcctccact
tacagcgctacttcctctgccaccgccccacaaagtgcttcagctgcctcggcagcctcc
agtcacccactgtctcttaaccccttgttactctccagtatgatttacccagggatgctt
ctcactccaggccttaaccttcctgtgtctgccacacagccgcagagctcaaacagtgac
cccacccctcctgctgcctcccagtcatcgccactggagacacagcggccagcagcagag
aaagacagagaggaagacgaggacgacgaggttttggaagaagaagaagaagatgatgat
gatgacgacgatgatgaggagtcagcagaacaaaaagagaacagtggtcctgaaggtttg
ggaaaagtagagtcatcttcatcagagtctgggagctcgtcttcatcctcagacaattca
gactccagtgacgaggactga
DBGET
integrated database retrieval system
