Scomber japonicus (chub mackerel): 128378446
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Entry
128378446 CDS
T09718
Name
(RefSeq) thyroid hormone receptor alpha
KO
K05547
thyroid hormone receptor alpha
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04080
Neuroactive ligand-receptor interaction
sjo04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
128378446
04081 Hormone signaling
128378446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128378446
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sjo03310
]
128378446
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
128378446
Nuclear receptors [BR:
sjo03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
128378446
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
128378446
NCBI-ProteinID:
XP_053193939
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Position
18:7100124..7135248
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AA seq
416 aa
AA seq
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MEPLSNKQDSNSSEGDEKGWPDVPKRKRKNSQCSVKSMSALSVSVPGYIPSYLEKDEPCV
VCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKK
CIAVGMAMDLVLDESKRVAKRRLIEENREKRKREEMVRTLQVRPEPDSAEWELIRMVTDA
HRNTNAQGSSWKQKRKFLSDDIGQGPMMPTSDRDKVDLEAFSEFTKIMTPAITRVVDFAK
KLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVKREQLKNGGLGV
VSDAIFDLGKSLSQFNLDDSEVALMQAVLLMSSDRSGLTSVKKIEQCQEAYLLAFEHYIN
YRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPPLFLEVFEDQEV
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggaaccactgtccaacaagcaggatagcaactcatcagagggagatgagaaagggtgg
ccagatgtgccaaagagaaagaggaagaacagccaatgttcggtgaagagtatgtctgct
cttagcgtctctgttccagggtacatccccagctacctggagaaggatgagccatgtgtg
gtgtgtggggacaaggcgactggctaccactaccgctgcatcacctgcgagggttgcaag
ggtttcttccgcaggaccatccagaagaacctccatccagcttactcttgtaaatatgag
ggctgctgcatcattgacaaaatcacccgcaaccagtgccagctgtgccgctttaaaaag
tgcatcgctgtgggcatggccatggacttggtgctggacgagtcgaagcgcgtggccaag
cggcgtctcatcgaggagaatagagaaaaaaggaagagggaggagatggtgcggacgctg
caggtgaggccggagccggacagtgcggagtgggagctgatcaggatggtaaccgatgcc
caccgaaacaccaacgcccagggctccagctggaaacagaagcgcaagtttttgtcagat
gatattgggcagggtccaatgatgcccacttctgacagagacaaggtcgacctggaagcc
ttcagtgaattcaccaagatcatgacccccgccatcacacgcgttgtcgactttgccaag
aaactacccatgttctctgagctgccatgtgaagaccagataatcttgctgaagggctgc
tgcatggagatcatgtcgctgcgcgccgccgtacgctacgacccggagagcgagacactc
acgctaaacggcgagatggcggtgaagcgcgagcagctgaaaaacggagggctgggcgtg
gtgtcggacgccatcttcgatttgggcaagagcctctcccagtttaacctggacgactcg
gaggtggcgctgatgcaggccgtgctgctcatgagttcagaccgctcagggttgaccagc
gtgaagaagatcgagcagtgtcaagaggcctacctgctggcgttcgagcactacatcaac
taccgcaagcacaacattccccacttctggcccaagctgctgatgaaggtgacagacctg
cgtatgatcggagcttgccacgccagccgcttcctccacatgaaggtggagtgtcccaac
gaactctttcccccgctcttcctagaggtcttcgaggaccaggaagtgtga
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