Scomber japonicus (chub mackerel): 128378565
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Entry
128378565 CDS
T09718
Symbol
rab5c
Name
(RefSeq) ras-related protein Rab-5C
KO
K07889
Ras-related protein Rab-5C
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04137
Mitophagy - animal
sjo04144
Endocytosis
sjo04145
Phagosome
sjo04148
Efferocytosis
sjo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
128378565 (rab5c)
04145 Phagosome
128378565 (rab5c)
04137 Mitophagy - animal
128378565 (rab5c)
04148 Efferocytosis
128378565 (rab5c)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128378565 (rab5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128378565 (rab5c)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sjo04147
]
128378565 (rab5c)
04031 GTP-binding proteins [BR:
sjo04031
]
128378565 (rab5c)
Membrane trafficking [BR:
sjo04131
]
Endocytosis
Rab GTPases and associated proteins
Rab GTPases
128378565 (rab5c)
Endosome - Lysosome transport
128378565 (rab5c)
Exosome [BR:
sjo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
128378565 (rab5c)
Exosomal proteins of other body fluids (saliva and urine)
128378565 (rab5c)
Exosomal proteins of colorectal cancer cells
128378565 (rab5c)
Exosomal proteins of bladder cancer cells
128378565 (rab5c)
GTP-binding proteins [BR:
sjo04031
]
Small (monomeric) G-proteins
Rab Family
Rab5/17/22/31 [OT]
128378565 (rab5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ras
Roc
Arf
GTP_EFTU
MMR_HSR1
Gtr1_RagA
RsgA_GTPase
AAA_16
MCR_beta
BrnT_toxin
Motif
Other DBs
NCBI-GeneID:
128378565
NCBI-ProteinID:
XP_053194103
LinkDB
All DBs
Position
18:complement(19158859..19170551)
Genome browser
AA seq
220 aa
AA seq
DB search
MAGRGGPARTNGTAASNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKELQ
RQASPNIVIALAGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
KLPKNEPQGGAGAGGRARGGVDLQEAAPQGRSGQCCGSGN
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atggcagggcgaggcggaccagcacggaccaacggcactgcagcgagcaacaagatctgc
cagtttaagttagtgctgttgggggagtcggcggtggggaaatccagcttggtgctgcgc
tttgtaaaaggccagtttcacgagtaccaggagagcaccatcggagctgccttcctcaca
cagacggtatgtttggatgatacaacagtcaaatttgagatctgggacactgcaggacag
gaacggtatcacagcttggcacccatgtactacaggggagcccaggcagccattgtggtc
tacgatatcaccaacacagatacattcacacgtgcaaagaactgggtgaaggagctccag
cgacaagccagcccaaacattgttattgcactggcagggaacaaagcagacctggccaac
aagagagctgtagatttccaggaagcacaagcatatgcagatgacaacagtttgctcttc
atggagacttcagccaagactgctatgaatgttaatgagatttttatggctatagccaag
aagcttcctaagaacgagcctcagggtggagctggagctggtggacgagccagaggcggc
gtggacctgcaggaagccgcaccacagggcagaagcggccagtgctgcgggagcgggaac
taa
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