KEGG   Scomber japonicus (chub mackerel): 128378657
Entry
128378657         CDS       T09718                                 
Symbol
rbb4l
Name
(RefSeq) histone-binding protein RBBP7
  KO
K10752  histone-binding protein RBBP4
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03082  ATP-dependent chromatin remodeling
sjo03083  Polycomb repressive complex
sjo04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    128378657 (rbb4l)
   03083 Polycomb repressive complex
    128378657 (rbb4l)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    128378657 (rbb4l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sjo03036]
    128378657 (rbb4l)
Chromosome and associated proteins [BR:sjo03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     128378657 (rbb4l)
  Histone modification proteins
   HAT complexes
    HATB complex
     128378657 (rbb4l)
   HDAC complexes
    Sin3A-HDAC complex
     128378657 (rbb4l)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     128378657 (rbb4l)
    PRC2.2
     128378657 (rbb4l)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     128378657 (rbb4l)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    128378657 (rbb4l)
  Chromatin remodeling factors
   NuRD complex
    128378657 (rbb4l)
   NuRF complex
    128378657 (rbb4l)
   NuRF complex (fruit fly)
    128378657 (rbb4l)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 EIF3I WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st Beta-prop_DCAF12 ANAPC4_WD40 WD40_RFWD3 Beta-prop_RIG_1st eIF2A WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_SPT8 MIOS_WD40 NBCH_WD40 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 128378657
NCBI-ProteinID: XP_053194233
LinkDB
Position
1:4394753..4409571
AA seq 426 aa
MADKEVYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDY
AVHRLVLGTHTSDEQNHLVIASVQVPNDDAQFDASHYDSEKGAEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQSPCIIATKTPTSDVLVFDYTKHPSKPDPSGECSPDLRLKGHQKEG
YGLSWNPNLSGNLLSASDDHTICLWDIGAGPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKASHAVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPDTPASE
LEAQGS
NT seq 1281 nt   +upstreamnt  +downstreamnt
atggcggataaagaagtgtatgatgatgcggtggaagaaagggtcatcaatgaagagtac
aagatctggaagaaaaacacacctttcctgtatgacctggtgatgactcacgcactggag
tggcccagccttactgtccagtggcttccagatgtcaccagacccgagggaaaggactat
gccgtccacaggctggttttggggacccatacatcagatgagcagaaccacctggtcata
gcaagcgtccaggtaccaaatgatgatgcccagtttgatgcatcgcactacgacagcgag
aaaggagcagagtttggtggatttggttcagtaagcgggaaaatagaaatcgagatcaag
atcaaccatgaaggagaggtgaaccgagcccgttacatgccccagagtccctgcatcatt
gccaccaagacccccacctctgacgtgctggtctttgactacactaaacacccatctaaa
ccagatcccagtggggagtgtagccctgacctgaggctgaaaggtcatcagaaagaaggt
tatggtctttcctggaaccccaacctcagtggtaacctgctcagtgcctctgatgatcat
actatctgtctatgggacatcggggccggtccaaaagaagggaagatcgtggatgccaag
accatcttcacgggccacacagctgtggtggaagatgtttcctggcatctgctccacgaa
tcgctgttcggctccgtggccgacgaccaaaaactcatgatatgggacactcgatccaac
aacacgtccaaagccagccacgcagtagacgctcacactgctgaagtcaactgtctgagc
ttcaacccctacagcgagttcattctggccactggttctgctgacaagactgttgcattg
tgggatctcaggaacctcaaactgaagcttcactcctttgagtctcacaaagatgaaatt
ttccaggtacaatggtctcctcacaatgagaccatcctggcctccagcggcaccgaccgg
cgtctcaatgtctgggatctcagtaaaattggggaggagcagtcagctgaagacgctgaa
gacggaccaccagaactcctgttcatccacggtggacacactgccaagatctccgacttc
tcctggaaccccaatgaaccctgggtcatctgttcagtgtctgaggacaacatcatgcaa
gtgtggcagatggcagagaacatctacaacgacgaggagccagacacccctgcatcagag
ctggaggcccagggatcataa

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