Scomber japonicus (chub mackerel): 128378758
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Entry
128378758 CDS
T09718
Symbol
ciita
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sjo01001
]
128378758 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sjo04054
]
128378758 (ciita)
Enzymes [BR:
sjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
128378758 (ciita)
Protein kinases [BR:
sjo01001
]
Serine/threonine kinases: Other
TAF1 family
128378758 (ciita)
Pattern recognition receptors [BR:
sjo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128378758 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
LRR_8
AAA_16
nSTAND3
AAA_22
AAA
NPHP3_N
TsaE
HJURP_mid
Motif
Other DBs
NCBI-GeneID:
128378758
NCBI-ProteinID:
XP_053194319
LinkDB
All DBs
Position
18:complement(11937178..11949336)
Genome browser
AA seq
1121 aa
AA seq
DB search
MPTRAKRQRTTGRAKTKKAPTEPAVSEGSDMGSEPIPAETAGLSTSPPRILQFRTPIRFI
TIPDTPGYQVVQTLSPVIRLPLPNTAAAPTYIFVPAPSPPRNLQVPPLSPVNGAVAPVQM
SSSPPGSLSDTASKAMSPHCASPLSPSNETSPCKEPPVPQSPTVLDIPQSVKDYIQKAKA
HMSQACQDMEAGLNLASHYVDVEVIQREILRSGKNTNKCLDKELVIIGDTDRQKSLLGQS
QIFESSNGDKSKRYILLFGNAGMGKTTLIKKLCLDWSRDCIPQFDFVFLLDGKALTITEP
TYSLQTLLLNLSSFAPSCIDPQAVYAQILAAPKRVLIIFDGFEQLRDYEILLQTQEKDLF
SSMQKDSKAQTYTVRQLYAAILQRALLQGSTLLLSTRPRGTASQLLRRADSLLEMSGFTP
TYVESYLSQYFTDAALRASALDCLQNSSYLHLLCWNPGLCRLVCLVLEQSKSAGTLPRTL
TGLCHQVLRLKMERDCSNTNSQAEAQAQISIQCVEETQTHVSSSTDVKRRSKNTQRKSRT
QVHTRSRNQRAKRAKAKEKEADDLEAEEMKSGGGEVQNTEDRELLSQLSSLAWDGVKANS
SVIPAGRTISAKLKAFGLRTGIFLSHHLRMTQFYLSGETDGAKGKDGKEIGGGRKGERRV
NRGSTDVENSEDILLWANPFLQSYLAGVHLSLSRTVSDRSFLQTLPFQSGPKGRRRPQRE
EMELTLRFAVGLLFHNRTELQRLHLYTETTFRDMVVSKQGLVTKHIEELSHVDMSPAQIL
EACHYVYEASFTHDNNSRDSGGTRLATHLAANLPEVLTFHGVSLSPLDTFAVQKILERGG
TEGRSFCLDLEDSGIQISGLRALVGLSDINTYRACIADVITLWGELKQSGEEVLLQQVVS
KFKIHPLKATQVCHIEHLAKLVNIHVNRRLSDSSSQSDSILAEGVPAVKELHKLEFALGP
ESGPLALPKLWELLPGLNNLQHLDLENSKINDKGAEKLAEALVSLCSLEILNLSQNCIGD
EGVKKLTATLRDLPKMHHLSLYSNVISDEGAESLAAALPHMASLTELDVTYNKLTDVGAQ
SLGASLRNCKRIKTLRMWNQCIPYGVFERLQQQDQRIAWLS
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccagagctaaaaggcaacgaacaacaggtcgagcaaagactaaaaaggcaccg
actgagccagctgtcagtgagggtagtgacatgggatcagagccaattccagcagagaca
gcaggcctctccacatctccaccaagaatccttcaattccgtactcccatccggtttatc
accatcccagacaccccaggatatcaggttgttcagacactgagtccggttattcgactt
ccactcccaaatacagctgctgcacccacatacatatttgtgcctgctccctcaccaccc
cgcaacctccaagtgccacccctctcccctgtgaacggtgcagtagcaccagttcaaatg
agttcatccccacctggatctttgtcagacactgctagcaaagctatgtctccccattgt
gcttcaccactctcccccagtaatgagacatccccttgtaaagaaccacctgttcctcag
tctcccaccgtccttgacattccacagagtgtcaaggactacattcagaaggccaaagcc
cacatgagtcaagcctgtcaggatatggaggcaggtttgaacctggcctctcattacgta
gacgtggaagtgatccagagagagatccttcgttctggaaaaaacacaaacaaatgcctg
gacaaagagttagtcatcattggagacacagaccgacaaaaaagcttgttggggcagagt
cagatctttgagagctcaaatggagacaaatccaaacgctacatattgctattcggcaat
gcaggcatgggaaaaaccactctgatcaagaagctgtgtcttgactggtccagagactgc
atccctcagtttgactttgtcttcttattagatggcaaagcactcaccataacagagccg
acctatagccttcaaaccctcctgctcaacctctcctcctttgccccttcctgtattgac
ccccaagcagtgtatgctcaaatcctcgcagctcctaagcgtgtgctcatcatttttgat
gggtttgaacagttgcgggactatgaaattctactccagacccaggaaaaagatttattc
tcatcaatgcagaaagacagtaaagcgcagacatacacagtgagacagctatacgctgcc
atccttcagcgggccctcctacagggcagcacgctattgctctctacccgaccaagaggc
actgccagccagctactgcggcgggcagacagccttttggagatgagtggtttcaccccc
acatatgtcgagagttatttgtcacagtactttactgatgctgccctcagggcatctgct
ttggactgcttacaaaactccagctatctacatctcctctgctggaaccctgggctatgt
cgactggtgtgcttggttttagagcagtccaaaagtgcagggactctaccgagaacttta
actgggctctgccatcaagtgcttcgcctaaaaatggaaagggactgtagtaacacaaac
tcacaggctgaggctcaagcacaaatatccattcaatgtgtagaagaaacccagacacat
gtctctagtagcactgatgtgaagagaagatccaaaaatactcagagaaagtcccgaaca
caggtgcacactcgctctcgcaaccaaagagcaaagagggcaaaagcaaaggagaaagag
gcagatgatttggaggcagaggagatgaagagtggtggaggtgaagtacagaacacagag
gacagagagttgctgtcccagctgagctctttagcctgggatggggtcaaagccaactct
tccgtcattcccgcaggacggaccatatccgccaaactcaaggcgtttggcctcaggaca
gggatattcctctctcaccacctgaggatgacacagttttacttaagtggtgagacggat
ggagcaaaaggaaaggatggaaaagaaataggaggtggaaggaaaggagaaaggagggta
aaccgaggaagcacagatgtggaaaacagtgaagacatacttctgtgggctaaccccttc
cttcagagttacctggcaggggtccatctgtctctgtcaagaactgtatcagaccgttcc
ttcctgcagaccctccctttccaatcaggcccaaaggggcgtcggcgaccccaaagagag
gagatggagctaacattgagatttgcagttgggctcctgtttcacaatcggacagagctg
cagaggcttcatttgtacacagagacaaccttcagagacatggtggtcagcaagcagggt
ttagtaaccaaacacattgaggagctttcccatgttgacatgagccccgcacagattctg
gaggcatgtcactatgtttatgaggcaagttttacacatgataacaatagcagagacagt
ggtggcacacgactggccactcacctggcagcgaaccttccagaggtcctgacattccac
ggagtttcactaagcccactggacacgttcgctgtgcagaagattcttgaaaggggtgga
actgaaggtagaagtttctgtttggatcttgaggactctgggatacagatctctggactc
agggccctggtggggctcagcgacatcaacacatacagggcgtgcattgccgatgtcatc
accctatggggagaactaaagcagagtggtgaagaggtgctcctacaacaggtggtctcc
aagttcaagatccaccctctgaaagccacgcaggtctgtcacatagagcacctggccaag
ctggtgaacatacatgtgaacaggagactgtcagacagctccagccaatcagattccatc
ctggcagagggagtgccagcagtcaaagagctacacaagctggagtttgcacttggtcca
gagagtggccccctggctcttcccaagctgtgggagctcctaccaggtttaaataacctg
cagcacttggatttagagaacagcaagatcaacgacaaaggagctgagaagttggcagaa
gctttagtctccctctgctctcttgagatactcaatctgtcacagaattgtataggcgac
gagggggtgaagaaactcacagccacactgagggatctacccaaaatgcaccatttaagt
ctctacagtaatgtgatttctgatgaaggggcagagagtttggctgctgccctccctcac
atggcatctctcactgagctagacgtgacgtataacaagttgacagatgttggtgcacaa
agccttggagccagtctaagaaactgtaaaagaatcaagactttgaggatgtggaaccag
tgtattccatatggagtatttgagagacttcagcagcaggaccagaggatcgcttggctg
tcgtaa
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