Scomber japonicus (chub mackerel): 128378787
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Entry
128378787 CDS
T09718
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128378787 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128378787 (cpsf4)
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128378787 (cpsf4)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128378787 (cpsf4)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
128378787 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
128378787
NCBI-ProteinID:
XP_053194354
LinkDB
All DBs
Position
18:10521709..10525801
Genome browser
AA seq
266 aa
AA seq
DB search
MQDLLATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGSAVCEFFMRAACIKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGASEQPP
LPQQAQNQTKPVPTIGRSSLSLIQLTNSSPGQRPQNNMMNTGMQQNNMASNRGPRPLDQV
TCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatttactggccaccgtggatcacatcaagtttgatcttgagatcgctgtggag
cagcagctgggggcgcagccgctacctttccccggcatggacaagtccggctctgctgtg
tgtgagttcttcatgagagcagcgtgtataaaaggcgggatgtgtccgttccgtcacatc
agcggagagaagacggtggtgtgtaagcattggctcagaggactgtgtaagaagggagac
cagtgcgagtttctccacgagtacgacatgaccaagatgcctgaatgctacttctactct
aagtttggtgagtgcagcaacaaggaatgtccgttcctgcacatcgatccagagtcaaag
atcaaagactgtccctggtacgaccgaggcttctgcaaacacggtcccgactgcaggcac
agacacacaagaagggtgatctgtgtcaattacctggtgggcttctgtccagaaggaaaa
tcctgtaaatttatgcatcctcgttttgagttacccatgggtgcttctgaacagcctcct
ctaccacaacaagcccagaaccagacaaagccggtgcccaccatcggacgctcctcgctc
tctctaatccagctgaccaactccagtccaggtcagcggccgcaaaacaacatgatgaat
acgggcatgcagcaaaataacatggcttccaacagagggcctcgaccgctggaccaggtc
acctgctacaagtgtggagagaagggtcactatgccaacaaatgcaccaaaggtcacctg
gccttcctgagcggacagtaa
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integrated database retrieval system
