Scomber japonicus (chub mackerel): 128378906
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Entry
128378906 CDS
T09718
Symbol
shank1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
sjo
Scomber japonicus (chub mackerel)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
SAM_1
Ank_4
SH3_2
Ank_5
SAM_2
PDZ_6
PDZ
SH3_9
FERM_f0
SH3_1
Motif
Other DBs
NCBI-GeneID:
128378906
NCBI-ProteinID:
XP_053194460
LinkDB
All DBs
Position
18:24816574..24887284
Genome browser
AA seq
2461 aa
AA seq
DB search
MTMPFSPLSSDEEQQRMLGNNRHLYPGAEDEEEEEEEEEEEMEEDDRDEDGEEENGELEG
EEEDDEEEMVEEVRRGGGLSRGGRGEGHRQSGKLAGRPTGDRQVRSGNPGHTTNPYSSNP
GPTHQQPANQIQQQQQRRLKERSASSVPSEDAHIAMMVFRIGIPDIKQTKCLRFNPDATV
WKAKQQVLCSLTESLRDVLNYGLFQPATDGHDAKFLEEERLLREYPQSFEKGVPYLEFRY
KTRVYKQTNLDEKQLAKLHTKASLKKFMDYIQTSAVDKMTKFLDKGLDPNYQDADTGETP
LSLAVQCEPGGGESIRVLVEGGAHIDFRAKDGLTPLHKAVRGHRHTALLVLLSLGASPDY
KDRRGLTPLYHTVLTGGDTSCCETLLYHHAKLGIRDENGWDETHQACQNGNSQHLEHLLF
YGADSSSQNASGNTALHICALYNKESCARILLYRGANKDTKNNSGQTPFQVAVMSGHFEL
GEIIKNHRDTDVVPFVESPKYAPQRRESARTLTIPHPHPFLRANSDSSMNLPEWMAVPNA
PSTNIVSVQGYKHTGTLRSSSSPRGARTRSPSRGRIGDKEDRSRQSRRQGPAPATTTVQT
AGQRRRLYSAVPGRVFVATRSHSAQGEREISFNKGDRVKVLSVGEGGYWEGTVRGRTGWF
PSDCVEEVMLRSQDNRSESRGERAKRLFRHYTVGSYDSFDAPSDYIIKEKTVLLQKKDSE
GFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVK
VGHRQVVNMIRQGGNSLMVKVVMVTRNPDMEEGSRKKIPQQSKRLSTPAIALRSKSMTSE
LEEMVERAATPWKKKSEFESSQVTEKKRTVYQMALNKLDEILAAAQQTISTNEAPGTRAQ
GPKRDRGRSFYGNEPNYGDQSGMGMMGLGFERGQYTSGHAPHHGMLRQKSIGVPEEEKQL
LHPPAMKFARSLSVPGPDDIPPPPTTAPPDPPFSSAPPLGWRAKSSQQPSVSVSQSTSTS
AHYQPYSQAVHFTHGGRERAGGPSTGPGGGAADHATSYTHATAHTAQSRTASRKVAYTGE
PVGAGIGAGGGAKAAGLRRGYSTAVPPSSIATVMPQQQQTTQSQPQRADRSAAGAGAGGP
KGGARRGKGPLVKQSKVEDLRMGQGTLGGKGSVEKSSIPIPTIIVKAPSTSSSGRSSQGS
SVEADAPASGETDDTKTPHGPPPSTPAPQPPAPPSIPAPPPPSLPSIRAQENLDFTSQFG
AAIVGAARRDRERFHEARRKSASLFMSAEDEVGLGIVSDGVGGVTRTQLSQQQLSTQAES
SSTRLRPSKSIDEGMFSGDTFIHHTRSMPPAFGLPEYSSAALDYQPKSVPTDLYTAAGRQ
QPASSTTFIHPLTGKALDPTSPLGLALAARERALRDDSRLRRGTEHHFTRQMSSVVFPSS
AVTSQPVSSATQTSSSSYLVTSSSLAATTATVGRPPSPRILRGVGSVWGEDGGGGERERE
GGGAREGLRVRFSEDKTVHTHHYQSQPYQPSYKERERERSRERERELSRERERSKEREGY
MRRAEQAAANAAAAESAAQQAAQSQPPRRPSFLRMESQAEAYILSLTPPSPPPTSTQQTT
STTGTTGSGMMVLPPPAPSVDADDEFVYADPLPPPLEFANSFDRGISGYSQRGMHPNMAA
RQQQVPPPPPPPPPPPPPPPPPQKEPFVSGFPAHTPLPSPQAGDSTASSLTSYDSEVANL
TQSAPSPSQTSPNPPPPSSPSTLQPTSIAGPPPPPSVSPPPPPGSYHRPFSMSHPHHLYN
STHTPGRSSPTPPPHTVAPPPAYRGPPAHSSTAATSAPHRGTASLTTTSSCATTTTAAAI
TTSTSTQLYHERTHATHTVSSSNITSSRRTGEHHRHPPAAKKGESQETVVDSGIEELDSR
SSSDHHLDSILALSGARGDRLDRGERGGGGVGGRMGGGSGTGESERGGDFLESYMSYLDG
QTFEMQNATAAASTYPKSNRFREGGRVSELHRQTSTAPPSYHSHRRRDEQEEEDVVEEGV
AEDEGGHDGYGVRDIQNLGRPTSPYFDRPRTPEMKPLWGEGQMSGEGGQFGTLLEGKKIY
PPASSMKPSIINELSSKLQQRTKDSWSSQRPLSRHRFSEDSASALSPPSARSQSPSPISL
SQPSLSPSPTPASQYPNWGRSPSPQPTAAPQPPRSHSPLSPTTYSPYPTSPKHRPVYRTK
ALEFQFIPSRESRKAESHILQRRRAPSPLISPSERPKLGPPRPSSLPLLPTTPLYSALYD
LRGSITPPSPGNPLGDPYFSPSPPLFAPSGAPPPPNSTLVVSRSLSPTHFLSGTSSPPLH
PLPPPTCLSYPHLPPPSPTKPFASKPLPYWTKYDVADWLGYLNLGEHRERFLDNEIDGSH
LPSLTKDDYLDLGVTRVGHRMNIERALRTVMDRLSSSPFPISVLSPREGQTDRRRDDGSR
S
NT seq
7386 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgccattcagccccctgtccagcgacgaggagcaacaaaggatgctgggaaac
aatcgacatctctacccaggggcggaggacgaggaggaggaggaggaagaagaggaggag
gaaatggaagaggacgaccgcgatgaggacggggaggaggagaatggcgagctggagggg
gaagaggaagatgacgaggaggagatggtggaggaggtcaggcgaggaggaggtctgtct
cgagggggaaggggtgagggacacaggcagtcaggtaaactggccgggcgacccaccggg
gacagacaggtccggtcagggaaccctgggcacaccacaaacccctattcatccaacccg
gggcccacgcaccaacagccagccaatcagatacagcagcagcagcagaggaggctgaag
gagcgcagcgccagctcggtgccatctgaagacgcccacatcgccatgatggtgtttcga
atcggcatcccggacataaagcaaacgaaatgtttgcgttttaacccggacgcgacggtg
tggaaggccaagcagcaggtgctgtgctccctgaccgaatctctacgggacgtcctgaac
tacggtctattccagcccgctaccgacggccacgacgccaagttcctggaggaggagagg
ctgctcagagagtacccacagtcctttgagaaaggggtgccatatttggagtttcgatat
aagaccagggtgtacaaacagaccaatctggatgagaagcaactggccaaactgcacacg
aaggccagcctgaaaaaattcatggattatatccaaaccagcgctgtggacaagatgacc
aagttcttagacaagggcctcgatcccaactaccaggacgctgatactggcgagactcct
ctgtccctggcggtgcagtgtgagccaggtggaggtgagtccatccgggtcctggtagaa
ggaggggctcatattgacttccgcgccaaagatggactcacaccgctacacaaggctgtt
cgaggccaccgccatacagccctgctggtcttgctgtctctgggcgcctctccagactac
aaggaccggcgagggctgacaccgctctaccacactgtgctgacagggggcgacacctcc
tgctgcgaaacactgctttaccaccacgccaagctgggcatcagggacgagaacggctgg
gacgagacacatcaggcctgtcagaacggtaactcgcagcatctggagcacctcctcttc
tacggggcagattcttcctcccagaacgcctccggaaacactgccttgcacatctgtgct
ttatacaacaaggaaagctgtgcacggattctgctctaccggggagcaaataaagacaca
aagaacaacagtgggcagaccccttttcaggtggctgtaatgtctggccattttgagctg
ggcgaaataatcaaaaatcaccgggatacagatgtggttcccttcgttgaatctccaaaa
tatgcccctcagaggcgggagagcgcccggacgctgacaataccccaccctcatcctttc
ctccgggccaacagtgacagcagcatgaacctgccggagtggatggcggtgcccaacgcc
ccaagcaccaacatcgtatcagtgcagggatataagcatacaggtactctgcggagctcc
agcagtcccagaggggcgaggacgcgctccccgtcccgagggaggatcggagacaaggag
gaccgcagcaggcagagccggagacaggggccggcccctgccaccactactgtacaaact
gccggacagcggagacgcctctacagtgccgtcccgggacgagtctttgtagctactcga
tcacactctgcccagggcgagagagaaatcagcttcaataagggagacagggtcaaagtg
ttgagtgtcggcgagggcggctactgggaggggacggtcagaggtcgcacaggctggttc
ccctctgactgtgtggaggaagtgatgcttcgaagccaagacaaccgatcagagagccgt
ggagaaagagccaaaaggctgtttcgccattacactgtgggatcctacgacagctttgac
gctcccagtgactatataatcaaggagaagacagtgctcctgcagaaaaaagacagcgag
ggtttcggctttgtgctgagaggggccaaagctcagactcccatcgaggagtttactccc
accccggccttccctgccctgcagtacctggagtcagtggacgagggaggagtggcgtgg
agagccggtctcaggatgggggatttcctgatagaggtcaatggtcagaacgtggtgaag
gttggtcaccggcaggtcgtcaacatgatccggcaaggtggtaacagtctcatggtaaag
gttgtcatggtaacccgcaaccctgacatggaggagggttccagaaagaaaatcccgcag
cagagtaagaggctgagtactccggctatcgccctacgatccaaatccatgacttcagag
ctggaggagatggtggagcgagctgctaccccttggaaaaaaaaatcagaattcgaatcc
tcacaagttacagagaagaagaggacagtctatcagatggctttgaataaactagatgaa
attcttgcagcagctcagcagacaatcagcaccaatgaggcgccggggacacgggcacag
gggccaaagagagacaggggacgaagtttctatggcaatgagccaaactacggggatcag
tccgggatggggatgatgggtctcggctttgagcgtggccagtacacctcaggtcacgcc
cctcatcacggtatgctgcggcagaaatccatcggggtgcctgaggaggagaagcagctc
cttcatcctccagccatgaagtttgcccgcagtctgtcggtgcccggcccagacgacatc
ccccctcctcccaccactgctccaccagatcctccgttctcctctgcacctccgctaggt
tggagagctaagtcgtctcagcagccctctgtgtccgtgtcccagtccacgtccacctct
gcgcactaccagccctactcccaggcagtgcacttcacccatggcggcagggagagggca
ggtggtcccagcaccggtcccggtggcggagcggcggaccacgcgacctcgtatactcac
gcaactgcccacactgctcagagcaggactgcttcgcggaaggttgcctatactggggag
cctgttggagctggcattggggcaggtggaggggccaaggcagcaggtcttagaagaggc
tacagtaccgccgtccccccgtccagcattgccactgtaatgccccagcaacaacagact
acccagagtcaaccccaacgagcagaccgcagtgcagctggggctggagcagggggtcct
aaaggaggggctcggagaggtaagggccccctggtgaagcaatcgaaggtagaggacctg
cgcatgggccagggtacattagggggcaaaggttcagtggagaaaagctccatccccatc
cccaccattatcgtcaaggctccttcaaccagcagcagtggacgcagcagccagggcagc
agcgtggaggccgatgcaccagcatcaggggagacagacgataccaaaacaccccacggt
cctcctccctccactcctgctccgcagccccctgccccaccttccatcccagcaccgcca
cctccctccttgccttctattcgagcccaggaaaacctggactttaccagccagtttggg
gctgccattgttggtgcagctcgcagagacagggagcggtttcacgaagctcgcagaaag
agtgcctccttgttcatgtctgctgaggacgaagtgggtcttgggatagtgagcgatgga
gtaggaggggtgacaaggactcagttgtcacagcagcagcttagcacacaggctgagagt
tcatcaacgcggctgcgaccgtccaagtctattgacgagggcatgttctctggggacacc
tttatccaccacacccgtagtatgcctcccgcctttggcttacctgagtattcatcagct
gccctagactatcagcccaagtctgtgcctactgacttgtacacagcagcaggtaggcaa
cagccagcctccagcaccaccttcattcaccctctaacaggaaaggctcttgatcccacg
tcgcctctcggtctcgccctggctgcccgagagcgtgctctgagagatgacagcaggtta
aggaggggaacagagcaccatttcacccgccagatgtcgagtgtggtgtttccttcatct
gctgtcacctctcagccagtgtcgtctgctacacagacctccagctcctcctacctggtc
acatcctcttctctggctgccaccacggccactgttggccgcccgccctcgcccagaatc
ctaagaggagttgggagtgtgtggggtgaggatggtggtggaggagagagggagcgggaa
ggaggaggggctcgcgaggggcttagagttcgcttttctgaggacaaaacggtccacacg
caccactaccagtctcagccatatcagccgtcctacaaggagagggagcgggagaggtcg
agggaacgggagagggagctgtcaagggaaagagagcggtctaaagagagagagggttac
atgaggagggcagagcaggctgccgccaatgcagcggccgccgagagcgctgctcagcag
gcggcccagtctcagccgcctcggagaccctcttttctcaggatggaaagtcaagctgaa
gcttatatcttgtccctcacacctccttctcctccacctaccagtactcagcagacaaca
agcactactgggaccactgggtctggcatgatggttctccctcctcctgccccctcagtc
gatgcggatgatgagtttgtctatgcggacccccttccacctccactggagtttgctaat
agctttgacagaggaatatcagggtactcacaacgtgggatgcaccccaacatggccgcc
cgccaacagcaggtcccacctcctccacctcctcctcccccgccaccaccacctccccct
cccccccaaaaagaaccattcgtaagcgggtttcctgctcatacgccccttccctcaccg
caggcaggggactccactgcctcaagtctcacatcttacgacagtgaagtggctaacctg
actcagtccgctccttccccctcccagacgtcgcccaaccctcctcctccctcctcaccc
tccaccttgcaacccacatctatagctggacctccacctcccccgtcagtctcaccgcca
cctcctcccggttcctaccacagacccttctctatgtcccatccccaccacctttataac
agcactcacactcctgggcgctcctcccctactcctcctccgcacactgtcgcaccacca
ccggcctaccgtggccccccagcgcactcctccactgctgccacctccgctccgcacagg
ggcactgcctccctcaccacgacctctagctgtgccactacaaccaccgctgctgccatc
acaacgagcacctccactcagctctaccatgagcgaacacacgcaacacatacagtttcc
tcctccaacatcactagtagtcgcaggacaggagagcaccaccgtcacccccctgctgcc
aagaaaggagagtcccaggagacggtggtggactctgggatcgaagaactggacagccgc
agcagcagcgaccaccacctggacagcatcctggctcttagtggagctcggggggacagg
ctggaccgaggggagagaggtggaggcggggttggtgggcggatgggagggggaagtggg
acaggggaatcagaaaggggaggagattttctggagtcgtacatgagctacctggatgga
caaacttttgagatgcagaacgccacagcagcagcctccacctacccaaaatccaacagg
tttagagagggaggtcgcgtcagcgagctacacagacagaccagcacagctcctccatcc
taccactcccacagacgaagagatgagcaggaagaggaggatgtggttgaggaaggtgtg
gcagaggatgaaggtggccacgatgggtacggagtgagggacatacagaatttgggacgt
ccgacttcgccgtattttgatcgcccacgcactcctgagatgaagcctctttggggcgag
gggcagatgagcggtgaaggaggccagttcgggacacttttagagggaaagaagatttac
cctcctgcatctagtatgaagcccagcatcataaatgagctgagcagcaaactgcagcaa
agaaccaaggacagctggagcagccagagaccactgagcagacacagattttcagaagac
tcagcctcagctctgagccccccatcagctcgatcccagtcgccgtctccgatctcgtta
tcgcagccatcgttgtccccatccccaaccccggcctcccagtaccccaactggggaagg
tccccatctcctcagcctacagcagcccctcaacctccacgttcacattccccgctatca
ccaacaacttattccccttaccccacctcccccaaacacagacctgtctaccggaccaaa
gccctggaattccaattcatccccagtcgtgagtcccgtaaagcggagtcacacatcctc
cagcgtaggcgagcacccagccccctcatctccccatcagagaggcccaagctgggccca
ccacgcccatcatcccttccactcctccccaccacacctctatacagcgccctctacgac
ctccgaggttcaatcactccaccatcacccgggaaccctcttggagatccttacttctcg
ccctctccacccctttttgccccctcgggtgcccctcctcctccaaactccactttagtt
gtttctcgatcactctctccgactcacttcttatccgggacgtcttctccacccctgcac
cctctccctccacctacatgcctgagctacccccatctaccacccccatcccctactaag
ccttttgcctccaagccgctaccctactggaccaagtacgacgttgcagactggctagga
tacctgaacctgggcgagcacagagagcgtttcctggacaacgagattgacggcagtcat
ctgccctcccttaccaaggacgactatctggatttgggtgtgactcgtgtgggccatcgc
atgaatatagaacgagccctgaggacagtaatggacaggctgtccagcagcccgttcccc
atttctgttctctcacctcgggaaggacagactgacaggaggagggacgacgggagccgg
agctga
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integrated database retrieval system
