Scomber japonicus (chub mackerel): 128379035
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Entry
128379035 CDS
T09718
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03440
Homologous recombination
sjo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128379035 (top3a)
03460 Fanconi anemia pathway
128379035 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sjo03032
]
128379035 (top3a)
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128379035 (top3a)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
128379035 (top3a)
DNA replication proteins [BR:
sjo03032
]
Eukaryotic type
DNA Topoisomerases
128379035 (top3a)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
128379035 (top3a)
FA (Fanconi anemia) pathway
128379035 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
DUF6261
Lar_restr_allev
zf-LITAF-like
Motif
Other DBs
NCBI-GeneID:
128379035
NCBI-ProteinID:
XP_053194618
LinkDB
All DBs
Position
18:complement(10477005..10498077)
Genome browser
AA seq
1033 aa
AA seq
DB search
MLALNLLGRYLLRSGLHWPDVRRRFVCATQISRCQDRPQPADMPRGRGQITRVLCVAEKN
DAAKGISEIMSNGRSRRREGLSKFNKIYEYEYHLFGQNVTVSMTSVSGHLLGLEFKAPYQ
KWHSCSPVLLFDAEVEKYCPDNMVQIKRTLEKEVRQCQALVIWTDCDREGENIGFEIIDV
CKAVKPNLQVFRAKFSEITPNSIRTACETLIEPDSNISDAVDVRQELDLRIGASFTRFQT
LRLQKIFPESLANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVMHEVEEDIVEF
SWLRNRLFNHTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVEMEKLVSRKLKIN
AKETMKIAEKLYTKGFISYPRTETNSFPASLALAPLVELQTHSQDWGTFAQRVLEQPGGP
NPRQGKNSDEAHPPIHPTKFTNTLQGNEGRLYEFIVRHFLACVSQDAVGKETVVDIEIAQ
EKFSASGLMIIARNYLDVYPYDRWSTKVIPVYEQGTQFQPSAIEMVDGQTSPPQLLTEAD
LISLMEKHGIGTDATHADHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKP
NLRSELEADLKEVSVGRKDKWSVLQHHIQKYKNVFIESVRKAKKLDEALSPYLGAAHEIT
EAEQQQDMEIHLPVRKCPNCGRDMVLKRKKEGNSKYLSCVGFPACKTAVWFPDTVLDVRR
DDSICPTCQPHPVHMLHFQFRRGSLPPMMPLEFVGCIGGCDETLREVLDLKYLRAGGGGG
GGGGEDPRPPVPRPSRAEPPRAPRSNPRPSLPPVPSWAPQPRAPPGGGGGISADTNSDVI
VCNCGQDALLLTVRKDGPNQGRQFYKCNGGTCNFFLWADQPSQQGPPQSRGPALPPPMSS
QPPRPSLGFRNNPPGVGRDQVGSAGGHGDQIMCNCNEAAVTRTVQKDGPNKGRTFHTCGK
PREQQCGFFQWADENVPPPGGFGVTFNGGGDGGKKGRRITGDAGGNRPPAAKKPRTCGIC
HLPGHTRVTCPQR
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgctggcactgaacctcctcggtagatatttgcttcgctcgggactacactggccagac
gtccggcggaggtttgtgtgtgcgactcagattagccggtgtcaagaccgaccgcagccg
gcagacatgccccggggccgtggtcagatcacccgggtcctctgcgtcgccgagaagaac
gatgcagccaaaggcatctcagagatcatgtccaacgggagatccaggaggagagaaggg
ttgtcaaagtttaacaaaatctatgaatatgaatatcatctctttggtcagaatgtgacg
gtatcaatgacgtcagtatcaggccatttactgggtctagagtttaaagcaccgtaccag
aaatggcacagttgtagtcctgtgctgttatttgatgcggaggtagagaagtactgtcca
gataacatggtgcaaataaagcggacattggagaaagaggtgaggcagtgccaggcctta
gtcatctggactgattgtgacagagagggagaaaacatcggctttgaaatcatagatgtc
tgtaaagcagtgaagccaaatttacaagtcttccgggcaaagttttctgagatcacccca
aactccatacggacagcttgtgagactctaattgagccagactctaacatcagcgatgcc
gtggatgtccgccaggagctggacctgcggataggtgcatccttcactcgcttccaaacc
cttcgcctgcagaagatctttccagagtctcttgccaatcagctgatctcatacggcagc
tgtcagtttcccactcttggctttgtggtggagcgcttcaaagccatacaggctttcata
cctgagactttctacaagatcaaagtgatgcatgaggtggaggaagacattgtagagttc
agttggctgagaaaccgactcttcaaccacacagcttgcctggtgctctaccagatatgc
atggaggatcccatagcaacagtcacctcagtaaccagcaagcccaagagcaagtggagg
ccgcttcctttggacacagtggagatggagaaactggtatcgcggaagctgaaaataaat
gccaaagagaccatgaaaatagctgaaaagctctacaccaaagggtttatcagttacccc
cgtacagagacgaacagcttccctgcaagcctggctctcgcccccctggtggagctgcag
acgcatagtcaggactgggggacattcgctcagcgggtgctcgaacagcccgggggtccc
aacccacgacagggcaagaactctgacgaagcccatccccccatacaccccaccaagttc
accaacacactgcagggcaatgaaggtcgtttgtatgagttcatcgtccggcacttcctg
gcttgtgtatcccaggatgctgtggggaaggagactgtggtggacatagaaatcgctcaa
gaaaagttctctgcatcgggactcatgatcattgcaaggaactacctggacgtttacccg
tatgacaggtggagcaccaaggtgattccagtgtatgagcaaggcacccagttccagcct
tctgctatcgagatggtggacggacagacgagtcctccgcagctgctcactgaagccgac
cttatttcgctgatggagaagcacggcatcggtacagatgcaacacatgcagatcacatc
gagactataaagagtcgcatgtacgtgggattgacagcagaccagaggtttctccccgga
gagctcgggatggggctggtggagggttataactccatgggctatgagatgtctaaacca
aacctacgctctgaactggaagcggacctcaaggaggtatcagtgggaaggaaggacaag
tggagtgtgctgcagcaccacatccagaaatacaagaatgtcttcattgaatctgtcagg
aaggcaaagaagttagatgaagccctgtcgccatatctgggtgcagctcacgagatcact
gaagcagagcagcagcaggacatggagatccatttgccggtcagaaagtgccctaactgt
gggcgggacatggtactgaagaggaagaaggagggaaacagtaagtacctgtcctgtgtg
ggcttcccggcctgtaagactgcagtgtggttccctgatacagtgttggacgtcaggaga
gatgacagcatctgtcccacctgtcagccacaccctgttcacatgttacacttccaattc
cgaaggggcagcctccctcccatgatgcctttagaatttgtcggctgcatcggcgggtgc
gatgagacactcagagaggtgctggacctgaaatacctccgagcagggggaggtggaggt
ggaggtggaggagaggaccctcgtccaccagtcccaagaccctccagagcagagccaccc
agagccccaagatcaaatcctcgaccttcccttccacctgtcccctcctgggccccgcag
ccaagggctccaccaggtggcggtggtggcatcagcgcagacaccaacagtgatgtcatt
gtatgtaactgtggtcaggatgcgctcctcctgaccgtgcgcaaagatggtcccaaccag
gggcgccagttctacaaatgcaacggcgggacttgcaacttctttctgtgggcagatcag
ccgagtcagcaggggccaccgcagagtcgagggcctgcgctgccacctccaatgagctcc
caacctccaaggccttcactggggttcaggaacaacccccccggagtaggcagggaccag
gtagggtctgctggaggacacggggaccagattatgtgtaactgtaatgaagcagcagtg
acacgcacggtgcaaaaagacggtccaaacaagggtcgaacgttccacacctgcgggaaa
ccaagagaacagcagtgtggcttcttccagtgggctgacgagaatgtaccaccaccaggt
ggtttcggtgtcacatttaatggcggtggagacggagggaagaagggaaggaggataacg
ggagatgccggcggtaacagaccccccgctgctaagaaaccacgtacctgcggcatctgc
catttgccgggacacacccgagtcacctgcccccagcggtga
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