Scomber japonicus (chub mackerel): 128379126
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Entry
128379126 CDS
T09718
Symbol
hcn4
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
KO
K04957
hyperpolarization activated cyclic nucleotide-gated potassium channel 4
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sjo04040
]
128379126 (hcn4)
Ion channels [BR:
sjo04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
128379126 (hcn4)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Ion_trans_2
LPD1
Motif
Other DBs
NCBI-GeneID:
128379126
NCBI-ProteinID:
XP_053194767
LinkDB
All DBs
Position
1:complement(13443493..13509476)
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AA seq
1454 aa
AA seq
DB search
MQTVRLHSSMRKRLYSLPQHIGQKASIMGEEDSDKDTRRKSIRMKPLPSPTSGGSCKGIG
ETKSGESVIMETDIGRPMKTSSNGDCRRFRGSLSSITSRHVHDSDSAEERRLITEGDVTP
SEESPPGAIGDGPPDQGAQGASGGGTQNDSQDQQSGFIKLDGVDQILPDDERLYQAGFMH
RQFGAMLQPGVNKFSLRMFGSEKAVEREQERVKSAGFWIIHPYSDFRFYWDLTMLLLMVG
NLIIIPVGITFFKDEHTPPWIVFNVVSDTFFLMDLVLNFRTGIVKEDNTEIILDPQQIKI
KYLRSWFVVDFISSIPVDYIFLIVETRIDSDFYKTARALRIVRFTKILSLLRLLRLSRLI
RYIHQWEEIFHMTYDLASAMVRIVNLIGMMLLLCHWDGCLQFLVPMLQDFPADCWVSKNK
MVNDTWGQQYSYALFKAMSHMLCIGYGMYPPVGMTDVWLTILSMIVGATCYAMFVGHATA
LIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQRIHDYYEHRYQGKMFDEESILGELNE
PLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLKFEVFQPGDYIIREGTIGKKMYFI
QHGVVSVLTKGNKETKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEE
YPMMRRAFETVALDRLDRIGKKNSILQHKVQHDLSSGVLNYQENEIIQQIVQHDRDMAHC
AHLMQNIPPRTPPSPTPVIWAPLIQAPLQAAAATTSVAIALTHHPHLPPTLFRPPLSVLG
SLKDPPSRLKKFHTFVPSSTAPESAGDSPSSTPSKLRTGVDMPLLASFRAQHMTSGSGST
GSSKQASGSGGQRGPSGTGSGFSGGGGGASAFPFDPYSSSGSPSSSMAQLHPLPKQQQPF
RSSTPPLSNLFHQGSAGGSTGSGISGGAVGACGGATGWSSGGAVGGLVEGASGGDATWAR
EDFTTAATEATSEGHFVLGGATSRLVRGISGESMGGISEGSLGGACGRSAGGASGGSVGG
ITCGSVGDVTRRSMAGVSRGSIRRASRGSVGGASGDLLVTTTTGGSLRRASGGPVGGTAG
ATVGSLGSTSGASFGGVSGDFIIGNPGGSFGRASERSTSSHMGGGLSGPGGGLIGVHSSR
AAGGAVGSHLGGSPSCPVGGASGGITAGLIGSSRCQSPVSTGSSSPLPTQILLSQLPPKP
PQVAPLQQFAGGGRTTSGLNLFHSPPQGSPSSSRGHHSQQPTEGSPSSLSHFSLGGLQSG
FLPHQMSLERSALASLAQYGSANASPCLTPVAPSPTIQSPVAGRTFHYNDPSSTTGSHSS
LLMPQSSLPSQLPSQPHTTGRDSPLGRFSEDLKLLSSSHPSLPQEVAQALGHQTPRSLVE
TGYYPSPFSSPTLVPKPCSSVPGRMTPPIQMSPGHPHQTQSPRTSPALPLRRGSAAYSSD
LEPQTVRSKLPSNL
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactgtcaggttgcactcctccatgcgtaaaaggctctacagtttgccacaacac
attggacagaaagcatctataatgggtgaagaagactcagacaaggacacccggaggaag
agtatcaggatgaagcctctgccgtcgccgacctctgggggaagctgcaaaggcatcggg
gagaccaaaagtggggagtctgtgatcatggagacggacatagggagaccgatgaagacc
agctcaaatggagattgtcggagatttcgaggcagcctctcgtccatcacaagtcggcat
gtgcacgactcggactcggcggaggagagacgcctcatcactgagggggatgtcactccg
agcgaggagagcccccccggagccatcggtgatgggccgccggatcaaggcgcgcaaggg
gccagcggtggcggtacccaaaatgattcccaagaccagcagtcagggtttataaagttg
gatggcgttgatcaaattctgccggacgacgagagattatatcaagctgggttcatgcac
agacagtttggggcaatgcttcagccaggggtcaacaagttctccctgaggatgtttgga
agtgagaaggcggttgaacgagagcaagagcgggttaaatccgctggattttggattatt
cacccctacagtgatttcaggttttactgggacttgaccatgctgctgctgatggtgggc
aacctcatcatcatccccgtgggcatcacattcttcaaagatgagcacacgccaccctgg
atcgtgttcaacgtggtctctgacaccttcttcctcatggacctggttctcaacttcagg
acaggtatcgtcaaggaggacaacacagagatcatcctggacccacaacagatcaagatc
aagtacttgcgaagctggtttgtggtggacttcatctcctccatccctgtggactacatc
ttcctcatcgtggagacgcgcatcgactcagatttctataagacagcgcgcgccttacgg
attgtccgcttcaccaagatcctcagcttgctgcgactgctgcgcctctcaagactcatt
cgctacattcaccaatgggaagagatcttccacatgacgtatgacttagccagcgccatg
gtgaggatagtcaacctgattggcatgatgctgctcctgtgtcactgggacggctgcctg
cagttcctggtgcccatgctgcaggacttccccgccgattgctgggtgtccaaaaataag
atggtgaatgacacatggggacagcagtactcctacgcacttttcaaagctatgagccac
atgctgtgtattgggtatggcatgtaccccccggtgggcatgacagacgtgtggctgacc
atcctcagcatgattgtgggcgctacctgctacgccatgtttgtgggccatgccaccgca
ctaatccaatccctagactcgtctcgacggcagtaccaggagaagtacaaacaggtggag
caatacatgtcgttccacaagctgccagcagatatgaggcagagaatccatgactactat
gaacaccgttaccagggcaagatgtttgatgaggaaagcatcctgggagagctgaacgag
ccactccgagaggaaataatcaactttaactgtcgaaagctggtggcctcaatgcctctc
ttcgccaacgctgaccccaactttgtcacatccatgctcaccaagctaaagttcgaggtg
ttccagcctggggattacatcatcagggagggcaccattggcaagaaaatgtacttcata
caacatggggtcgtcagcgtactgaccaaaggcaataaagagaccaagctttccgacggc
tcctactttggggagatttgcttgctgacacgaggcagaaggacagccagtgtccgggcg
gacacatactgtcgtctgtactcattgtctgtggataacttcaatgaggtgctggaggag
tatcctatgatgagaagggcctttgagactgttgccctggacaggctggaccgtattggc
aagaaaaactccatcctgcagcacaaggtacagcacgacctcagctctggtgtactcaac
taccaggagaatgagatcatccagcagattgtgcagcatgacagggacatggcccactgc
gcccacctcatgcagaacatcccaccccggacacctccctcacctacccctgtcatctgg
gccccactgatccaggcccctctccaggcagcagccgcaaccacctcagtagccattgcc
ctaacacaccatccccacctcccaccaacgctcttcaggcctccactttctgttctaggc
tcccttaaggaccctcccagtcggcttaagaagtttcacacatttgttccttcatccaca
gctcctgaatctgcaggggactccccctctagcacaccctctaaactgcgcacaggggtg
gacatgccattgctggcctcttttcgggcccagcacatgacatcaggttctgggtcaact
ggctctagcaagcaggcctcaggtagtggaggccaacgtgggcctagtgggacagggtct
gggttcagtggaggtggaggaggggcctctgccttccccttcgacccatactcatcctct
ggttcaccctcatctagtatggcccagttacacccactacccaagcagcaacaacccttt
cgctccagcaccccaccattgtcaaacctcttccatcaaggatctgcaggtggaagcaca
gggtcaggaataagtggcggtgcagttggagcctgtggtggtgcaacaggttggtcttca
ggtggagcagttggaggtttggttgaaggggccagtggaggagatgctacctgggctaga
gaggactttacaactgcagcgacagaagcaacttccgaggggcactttgtgttgggaggg
gctactagtagattagtaagagggatctcaggggaatcaatgggagggatttctgaagga
tcacttggtggtgcttgtggcagatcagcaggtggggcctcaggtggatcagtggggggc
attacctgtgggtcagttggagatgtaaccaggagatcaatggcaggggtttctagagga
tcaataagaagagcttctaggggatcagtgggaggggcctctggagacttactggttaca
acgaccactggaggatcattgaggagggcttctggtggaccagtgggagggactgctgga
gccactgtaggatcattggggagtacttctggagcatcgtttggaggggtttctggtgat
tttattataggaaatcctggaggatcatttggaagggcttctgaaagatcaacatctagc
catatgggaggaggtttgagtgggccagggggagggttgattggagtccacagtagtaga
gcagcaggaggcgcagtagggagtcatttaggagggtctccttcttgtcctgtaggtggg
gcttctggtggaatcacagctggacttattggttcttcccgttgtcagagtcctgtttct
accggctcatccagccctttgcctacacaaattctccttagccagctacccccaaagcct
cctcaagtggctcctttgcagcagtttgctggaggaggaaggactaccagtggcttaaac
ctcttccactcccctccacaaggctccccatcctctagcagaggacatcatagtcaacag
cctactgagggctccccatcatccctcagccattttagcctgggaggcctccagtctggc
ttcctgcctcaccagatgtcccttgagaggtctgccctggcctctctggcccagtacggc
tcagcaaacgcctctccctgccttaccccagtcgcacccagccctactattcaaagtcca
gtggcaggcaggactttccactacaacgacccctctagtacaacaggatcccacagctct
ctgcttatgcctcagtcttctctcccttcacaacttcccagccagccacacacaacaggt
agagattctccactgggccgcttttcagaggacctaaagctattatccagctcacaccca
tctctgccccaggaggtggcccaggccttaggccaccaaacacctcgctccttggtggaa
actggatactacccttcacccttctcctcacccactctcgtgcccaaaccctgtagctca
gtgccaggacgcatgactcctccaatccagatgtctccggggcaccctcaccagactcag
tcccctaggacctccccggccttgcctctacggaggggctctgctgcctattcatcagat
ctagaacctcaaactgtccgctctaaactcccttccaatttgtga
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