Scomber japonicus (chub mackerel): 128379176
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Entry
128379176 CDS
T09718
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128379176 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sjo03041
]
128379176 (ddx42)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128379176 (ddx42)
Spliceosome [BR:
sjo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128379176 (ddx42)
Complex B
128379176 (ddx42)
Complex C
U2 SnRNP specific factors
128379176 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
128379176
NCBI-ProteinID:
XP_053194792
LinkDB
All DBs
Position
18:complement(16958553..16968067)
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AA seq
907 aa
AA seq
DB search
MNWNKGGPGIKRGFGFGGFSLAGKKEEPQLNQKSHTSFGPPGSSGYGKNQQLPSFYKIGT
KRANFDEENAYFEDDEEESSSNADLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEVE
NQAAKDMKKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTLEEDEENIDYD
SDGNPIAPTTKKIILPLPPIDHTEIDYPPFEKNFYNEHEELSNLTGTQVIELRQKLNLRV
SGAAPPKPCTSFAHFTFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSGK
TAAFIWPMLVHIIDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYGG
GSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVSYLVFDEADRMFDMGFEYQVRS
IASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVEMLPSGTD
KWGWLTRRLVEFTSSGSVLIFVTKKANSEELATNLTQEGYSLGLLHGDMDQSERNKVISD
FKKKNLPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLT
NKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKMNIGGGGLGYKER
PGLGAESSERSSSSSILSSTSSYEGYSKPNTGAMGDRMSAMKQAFQAQYKSHFVAASSGP
PKLTTKSNSSSGWTSAGSLSSVPTESPNGSERSHAATMSLSGFTSAGTLSSVPTSQTSPQ
QSFPPVAPAPLRDNSRDRHQEDWGRHGDSHHRHSSDRSERHSGDSRHGDRDRHGDRDRDR
YGDRDRYSSSGSSSGSRHGDSRNGDGNRRDREDRRSERDGGEGRGDRGDDSFAVPEPPKR
RKSRWDN
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtccaggtattaagcgaggttttgggtttggaggattttcc
cttgcggggaaaaaagaggaacctcaacttaatcaaaagtctcacacatcattcgggccc
ccaggatccagtggatatgggaaaaaccagcagcttccatccttctacaaaataggaaca
aaaagagccaattttgatgaagaaaatgcgtattttgaagacgatgaagaagagtccagc
agcaatgcggatctgccgtacatcccggctgagaactcgcccacacggcagcagatgcag
tctggcggcggctcagacagcgaggacgacccgctggatgcttttatggcagaggttgag
aaccaagcagctaaagacatgaagaaactagaggaaaaggaaaaggagaaaaagtcagcc
aagggtattcgtgatgacattgaagaagaagatgaacaagaagcctacttccgctacatg
gcagagaaccccacagccggcctgacactagaggaagatgaagagaacattgattatgac
agtgatggaaacccgattgcaccgaccacaaagaaaatcatcctacctcttcctcctatt
gatcacactgagattgattacccaccgtttgagaaaaacttctacaacgagcacgaggag
ctcagcaacctgactggaactcaagtgatcgagttaaggcagaaactgaacttgcgggtg
tctggtgccgcccctcctaaaccttgcacaagctttgcccacttcacctttgatgagcag
ctgatgcaccagatccgcaagtctgagtacactcagcccactccaattcagtgccagggt
gtgcccatagctctgtctggacgtgacatgattggtatcgccaaaactggcagcggtaaa
actgcagctttcatctggcccatgctggttcacatcatagaccagaaggagctggagcca
ggagaggggcccatcgcagtgatcgtgtgtcccaccagagagctttgtcagcagatccac
gcagaatgtaagcgtttcgggaaagcctactcgttgcgttctgtggcggtttatggagga
ggcagcatgtgggagcaggcgaaggctctacaggagggagcagagattgtggtgtgcaca
ccgggtcgtctgattgaccacgttaaaaagaaagccacatccctgcagagagtgtcgtac
ctggtgtttgatgaggctgatcgcatgtttgatatgggctttgaatatcaggtcagatct
atcgccagtcacgtccgcccagacagacagactcttctgttcagcgctacctttcgaaag
aagatagagaggctagccagagacatcttggtagaccctattcgtgtggtgcagggagac
attggagaggccaacgaggatgtgacccaggtggtggagatgcttcccagcggcactgat
aaatggggctggctcacccggcggctggtagagttcacctcctctggctcagtcctcatc
ttcgtcaccaagaaggccaactccgaggagctggccactaacctgacgcaggagggctac
agcttgggcctcctgcacggagacatggaccagagtgagaggaacaaggttatcagtgac
ttcaagaagaagaatttgcccattttagtggccaccgatgtagcagctcgaggtctggac
atcccgtccattcgtactgtggtgaactacgacgtggcgcgagacatcgacacgcacacg
cacaggatcggccgaaccggtcgcgccggagagaaaggtgtggcttacaccctcctcacc
aacaaagacacctcattcgctggtgacctggtgaggaatctggagggagccaatcaatcc
gtttccaaagaactgatggatttagccatgcagaatccgtggttcaggaagtccagattt
aaaggcggtaaaggaaagaagatgaatatcggtggaggtggacttggttacaaagagaga
ccaggactgggggctgaaagctccgaacgcagcagcagcagcagtattttgtcttccact
agcagctacgaaggttacagcaaaccaaacacgggggcgatgggagaccgcatgtcagcg
atgaaacaagccttccaggctcagtataagagtcactttgtggctgcgtccagcggccct
ccaaagctcaccaccaaatccaatagctcatcaggttggaccagtgctggcagcctgagc
tctgtacccacagagtcccccaacggctcagagcggtcccacgctgccaccatgtccctg
tcaggcttcaccagcgccggcaccctgagctcagtgcccaccagtcagaccagtccacag
caaagcttccctccagttgcccccgccccgctacgagataactcacgggacagacaccag
gaggactggggtcgccacggagacagtcaccaccgccacagcagcgacaggagcgaacgg
cacagcggagacagccgccacggggatcgggatcgccacggagacagagatcgcgaccgc
tacggggatcgggatcgctacagtagcagcggcagcagcagtggcagccgccatggcgac
agtcgtaacggagacgggaacaggagggacagagaggaccgacggagtgagagggatgga
ggggaagggaggggggacagaggagatgatagcttcgctgttcccgaaccgccaaaacgt
agaaagagcaggtgggacaactaa
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