Scomber japonicus (chub mackerel): 128379444
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Entry
128379444 CDS
T09718
Symbol
hdac5
Name
(RefSeq) histone deacetylase 5 isoform X1
KO
K11406
histone deacetylase 4/5 [EC:
3.5.1.98
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
128379444 (hdac5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sjo03036
]
128379444 (hdac5)
Enzymes [BR:
sjo01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
128379444 (hdac5)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
128379444 (hdac5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
HDAC4_Gln
Motif
Other DBs
NCBI-GeneID:
128379444
NCBI-ProteinID:
XP_053195034
LinkDB
All DBs
Position
18:6616721..6662018
Genome browser
AA seq
1153 aa
AA seq
DB search
MNSSHSSEPSAASRLGMLLHPTVSGLCAMLQTIYETESCFSSASTDSHQPLELLSSGNRS
SGSAMPTAVVEVKSSLPSGMQSPVGTASEQRGGGGEGGGGPGEGPGGGGGPVDLRTESRV
GSLSGGASGVDTALREQQLQQELVLLKQQQELQKQLLFAEFQKKHEVLTRQHEVQLQEHL
KVLSQQQQELLAAKRQQELEQKRKLEQQRHEEQEKQRLEQQLLLLRNKEKGKESAIASTE
VKLKLQEFLLSKKEPGTCGLNHSFSPKCWGAQHTSADQSSPPQSNTPGTPPSYKLPPLLG
NYEGKDDFPLRKTVSEPNLKVRSRLKQKVAERRSSPLLRRKDGTVISTFKKRAIEISVSS
LCNSAPGSGPSSPNSSNSAIANGNTGSVPNIQTELRSLHQTLGADGTLSPLSLYTSPSLP
NISLGLPANTHITPTQKLSNQQEAERQAIQSLRGGGALTGKFLSTSSLPAGVGHDVETPP
PSSHSAHSSLLQHVLLLEQARQQTAMLAVPMYSQSPLVTAERGVSGGMRAVNKLPRHRPL
ARTQSAPLPQSPQALQQLVVQQQHQHFLEKHYKMLSKGTDLPRPPPTHPEETEEELTETN
DMQEDDEGAGIHRLQKEGSDDSTPSSERLGVHMKGDEERGAMQVKGESTESELDEEEEDD
DVIQLREDDDERGSYTQALQQLGVLQSSLPHRPLGRAQSSPAATVNPIKHLFTTGLVYDS
LMLKHQCVCGNAHIHPEHAGRVQSIWSRLQETGLLGRCERIRGRKASLDEIQSVHSEFHT
LLYGTSPLNRHKLDHKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSAAVRMAVGSVI
ELAFRVAAGELKNGFAVVRPPGHHAEESTAMGFCFFNSVAITAKLLQQKLGVGKILIVDW
DIHHGNGTQQAFYSDPNVLYISLHRYDDGNFFPGSGAPEEVGSGAGVGFNVNIAWTGGVE
PPMGDVEYLTAFRSVVMPIAQQFSPDVVLVSAGFDAVEGHQSPLGGYNVSAKCFGQLTQL
LMGLAGGRVVMALEGGHDLTAICDASEACVSALLGDPCDSMFQWPQEKPCPKACSSLERV
IEIQSKHWSCLQTSGHSLLDSPLGAQGQSEKDEAETVSAMASLSVDVDQPGSVPDNTETS
RSTEEPMEEEPIL
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaattcatcacacagctcagaaccgagcgctgcctctcgtcttggcatgctgttgcat
cccaccgtgtcaggattgtgcgccatgttgcagaccatctatgagactgagtcctgtttt
tcttccgccagcacagacagccaccagcctctggagctcctgagcagcggcaacaggagc
tccggcagcgccatgcccaccgccgtagtggaggtgaagagcagcctcccatcaggcatg
cagagcccagtaggaacagcaagtgagcaaagaggaggaggtggagaaggtggtgggggt
ccaggagaaggccctggaggaggaggaggcccagtggacctccggacagagtccagggtg
gggtctctttctgggggtgcgtcaggggtggacacggccctgagagagcagcagctccag
caggaacttgtgctcctgaaacagcagcaggaactccagaaacagcttcttttcgcagag
ttccagaaaaaacacgaagtactaacacgacaacatgaagtccagcttcaggagcacctg
aaggtattgagtcagcaacaacaggagctgctggcagcaaagcggcagcaggagctcgaa
cagaagaggaaactggagcaacaaaggcacgaagaacaggagaaacagcgactggagcaa
cagctgctgctgctaaggaacaaggagaaaggcaaagagagtgccattgccagtacagag
gtgaagctgaagctgcaggagttccttctcagtaagaaagagccgggtacctgcggactg
aaccattccttctccccaaagtgctggggagcccagcacacctcagcagatcagagctct
cctccgcagagtaacaccccaggaacacctccctcctacaaactgcccccgctgctgggg
aactacgaaggcaaagacgacttcccgctccgcaagacggtctctgagcccaatctgaaa
gtgcgttcacggttgaagcagaaggtggcagagaggcggagctctccactcctccgaagg
aaggatggcaccgtcatcagcacctttaagaagagagccatagagatatcagtctcctct
ctctgtaatagcgctccaggttcaggtcccagcagtcccaacagctccaattcggccatt
gccaacggcaacacgggatcagtccccaacatacagacagagctccgatctctccatcag
acactgggggctgatgggacattgagtccgttgagtctctacacttcgccgtccttgcca
aatatctccctgggcctccctgccaacacacacatcacacccacccagaagctgtccaac
cagcaagaggccgagcgacaagccatccaatcactgcgaggaggtggggctttaacaggg
aagtttctctccacatcctcattacctgcaggtgtggggcatgatgtggaaaccccgcct
cccagctctcactccgcccattcctcgttattgcagcacgtactactgctggagcaggcc
agacaacagactgctatgctagctgtccccatgtacagccagtcgccgctggttacggca
gagcgaggcgtgtccggtggcatgcgggccgtcaacaagctgcctcgccatcgaccactg
gctcgaacccagagtgcacctttgccccagtccccgcaggccctgcagcagctggtggtt
cagcagcaacaccagcacttcctggagaaacactacaagatgctatcaaagggaacagac
ctccccaggccgccacccactcacccagaggagacagaggaggagctaacagagaccaat
gacatgcaggaggacgacgaaggggcgggaattcacaggcttcagaaggaggggtctgac
gacagcacgccctcctctgaacgactcggtgtgcacatgaagggtgacgaggaacgcggg
gccatgcaagtgaaaggggagagtactgagagcgagctggacgaagaggaagaggacgat
gatgtcatccaactgagggaggatgatgacgagagggggagctacacgcaggccttgcag
cagctgggtgtgttacagtcgtcgttgccccacagacctctgggaagagcgcagtcctcc
cctgcagccaccgtcaatcccatcaaacacctcttcaccaccgggctcgtgtatgacagt
ctgatgttgaagcatcagtgtgtgtgtggcaatgctcacatccacccagagcatgctggg
agagtgcagagcatctggtccagactgcaggagacgggcctgctgggccgctgtgagaga
attcgtgggcgtaaagcgtctctggatgagatccagtctgtccattcagagttccacact
ctgctctatggaaccagtccactcaacagacacaaactggaccacaagaagctgctgggt
ccaatcagccagaagatgtatgctgttcttccctgtggaggaataggggtggacagtgac
accgtgtggaacgagatgcactcgtcagcggcagtgcgcatggcggtcggctcggtgatt
gagctagccttcagagtggcagcgggggagctgaagaacggctttgcagtggtgcgtcca
ccaggtcaccatgctgaggaatccaccgctatggggttttgtttcttcaactcagtcgcc
atcactgctaaacttctgcagcagaaactgggagtgggcaagatcctcattgtggattgg
gacattcaccatggcaacggcacccagcaggccttctacagcgaccccaacgtcctctac
atctccctccatcgctacgacgacgggaacttctttcctggcagcggagcacccgaggag
gtgggatcgggtgcaggtgttggttttaatgttaacatagcgtggactggaggagtggag
ccccctatgggtgatgttgagtacctcactgcctttaggagcgtggtgatgcccatcgcg
cagcagttcagtccagacgttgttctagtgtccgcaggcttcgacgcagtagaaggtcat
cagtctcctctgggaggttacaacgtctccgccaagtgtttcggtcagctgacgcagctg
ctgatgggtctggcaggtgggcgggtggttatggcgctggagggcggtcacgatctcacc
gccatctgtgacgcatcggaggcctgcgtctcggcgctactaggagacccgtgtgactct
atgtttcagtggcctcaggagaagccctgtcccaaagcctgctcctcactggagagagtc
atagagatccagagtaaacactggtcgtgtctccagacgagcggccactcgctattggac
agccccctgggtgctcagggccaatcagagaaggacgaggcagaaacggtcagcgccatg
gcgtccctgagcgttgacgtcgatcagcctggctctgtccctgacaacacggaaaccagc
aggtccacagaggagccaatggaagaagagcctatactgtag
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integrated database retrieval system
