Scomber japonicus (chub mackerel): 128379527
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Entry
128379527 CDS
T09718
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128379527 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128379527 (xab2)
03041 Spliceosome [BR:
sjo03041
]
128379527 (xab2)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128379527 (xab2)
Spliceosome [BR:
sjo03041
]
Complex B
Other components
Prp19-related factors
128379527 (xab2)
Complex C
128379527 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
Suf
TPR_2
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
SNAP
TPR_MalT
NRDE-2
TPR_1
Big_2
Motif
Other DBs
NCBI-GeneID:
128379527
NCBI-ProteinID:
XP_053195148
LinkDB
All DBs
Position
18:complement(21861956..21869407)
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLNGKTDVIFENDDLPYEEEIIRNPYSVKCWMRYIEFKQNGSKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPVYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEDEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLATVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATEAVETQERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRVTAEFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTSSTGTVSDLAPGQLGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDDDEDDEDQGPEEVQLEQKSVPTA
VYGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaacggaaaaacggatgttatatttgagaacgatgatctgccctacgag
gaggagattatcagaaacccatactcagtcaagtgctggatgcggtacattgaattcaaa
cagaatggatccaaatccaccctcaatatgatatatgaacgggctctgaaagagcttccg
ggaagctataagctatggtacaattacctgagagagagaagaaaacaagtcaaaggaaaa
tgtatcactgaaccagtttatgaagaggtcaataattgccacgaaagggcattggtgttc
atgcataagatgcccagaatatggcttgattactgccagttccttgtatctcaatgtaag
ataacaagaagcagacgaacatttgaccgtgcactcagagctcttcccgtcactcagcac
ccacgtatctggcctttgtatctccgctttgttcgtaacctgcccctgcctgagacagcc
atacgagtgtaccgcaggtaccttaagctttctccagagaatgcagaggaatacatcgac
tacttacggtctgttggccgcttggatgaagcagctgtgcggcttgcagctgttgtcaat
gatgaaagctttgtgtccaaagagggcaagtccaactaccaactgtggcatgagttgtgc
gacctgatctcacagaaccccgataaggtgacctctctgaatgtaggagccatcatccgg
ggaggcctcactcgctttacagaccagcttggcaaactttggtgctccttggctgactat
tacatcaggagtggtcactttgaaaaggcccgtgatgtatatgaggaggcgatcctaact
gtggtaacagtaagggatttcacacaagtgtttgatagttacgcccagtttgaggagagc
atgatcgctgccaagatggagaccaccgctgagatggggcaggatgaagatgaggacatc
gacctggagcttaggctggcccgctttgagcagctgatagcacggcggcctctcctgttg
aacagtgtacttctgcggcagaaccctcataatgtccatgagtggcacaagagggtaaaa
ctgtatgagggaaatccacggcagatcatcaacacatacactgaggcagtacagactgtg
gatccaatgaaggccacaggaaagcctcactctctctgggtttcttttgctaaattctac
gaagaaaatgagcagctggatgacgcaaggactatctttgagaaggccaccaaggtgaac
tacaagcaggtggatgaccttgccacagtgtggtgtgaatatggagagatggagctgcga
cacgaaaactatgaacaggcactgcgcatactcaggaaagctacagccatcccatccaag
aaagcagagtacttcgatgcatctgagccagtccaaaacagagtctacaagtccttgaag
gtctggtctatgctggcagatttagaggagagtcttggcactttccagtctacaaaagca
gtctatgaccgcatcattgacctccgcattgccacaccacagatcatcatcaattatgcc
atgttccttgaagagcacaactattttgaggaaagcttcaaagcatatgagcgtggcatc
gctctcttcaggtggccaaatgtttacgacatatggaacacttacctaaccaagtttatt
gatcgttatgggggcaagaagctggagagagccagagatttatttgaacaagccctggat
ggctgtcctgccaagtttgccaagaccatttacctgttgtatgccaaattggaggaggag
tatggattggcacgacatgccatggctgtatatgagagagcgacagaagctgtggaaact
caggagagacatcacatgttcaatatctacatcaagagagcagctgaaatatatggagtg
acatataccagagccatttaccagaaggctattgaggtccttcctgatgaacatgcaagg
gacatgtgcctgcgatttgctgacatggagagtaaattgggtgagattgatcggggcaga
gccatctactcctactgctcccagatctgtgaccccagggtgacagctgaattctggcag
acttggaaagaatttgagatccgccatggaaatgaggacactattagagaaatgctgagg
atcaagcgcagtgtccaggctacatacaacacccaggtcaatttcatgtcctctcagatg
atgaaggccacaacaagctctacaggcactgtgtcagatcttgctccaggccagttggga
attgatgacatgaagatgctggagcagaaagcacagcagcttgctgcagaggcagagcag
gataaacccaaaccaaaagaaaagattctctttgtcaggagtgacacctctcgcagtgag
ttggctgaactttccaaacaagctaatcctgatgagattgacattgatgatgatgatgaa
gatgatgaagaccaaggtccagaggaggtgcagcttgaacagaagagtgtccccacagct
gtgtatggagggctcaaagatgactga
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