Scomber japonicus (chub mackerel): 128379624
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Entry
128379624 CDS
T09718
Name
(RefSeq) ATP-dependent RNA helicase DHX58-like
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128379624
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sjo04054
]
128379624
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128379624
Pattern recognition receptors [BR:
sjo04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
128379624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_19
AAA_22
PhoH
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
128379624
NCBI-ProteinID:
XP_053195287
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All DBs
Position
18:complement(19143054..19147435)
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AA seq
679 aa
AA seq
DB search
MADFGLRSYQEEVVERALRRENIIIWLPTGGGKTRAAVYVAKRHLETTEQAKVVVLVNKV
HLVEQHFHKEFKPHLGPEYKLEAVSGDSVQKDFFGKVVEKSDVVICTAQILFNALTNTEE
TKHVELSDITLLIIDECHHTQKEAVYNKIMRYYLEKKLKGEQKLPQILGLTASPGTGGAK
ILEKAVEHVLQICANLDSTIVSTKDCTAELKEKVPRPYKSMDIVDKRPQDPFGDHLKSMM
QKIHNFMPLPPDFRLRESGTQEYEQDVMTLEQRGVEEQNRILAQCALHLREYNDALLIND
TLRMIDAYRSLEDFYDTKTDNSIDETDDFLVGLFQENQVKLRKIAEHSQYENPKMGKLET
VLLKQFGPDVQSRGILFCKTRRSTHCLNDWVLNNRVLQEAGIKAAVLTGAGGGISHMTQN
EQTDTIRKFRQGALNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQARGRARAPEAE
YSMVGQTGGQEVRREGINELLEELTGQAIAKIQEMSPHDFSTKINALQKEALIGSKVAEM
HQKEKRGRFDASRVQLLCRNCFKSVASGSDIKLIETLFVNVNPDFQKHYNVGEQVIKDKI
FEDWEPGCSISCNDCNKDWGFEIKYRKIVLLPTIAIKNFALQTPEGRTTVKKWKNVSFTV
EEFDFQEYIQDNFPDITID
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcagattttggacttcgttcttaccaggaagaagtggttgaaagggcccttcgaaga
gagaacatcattatttggctgccaacaggaggggggaagactcgtgctgctgtgtatgtg
gcaaaaagacacctggagactactgaacaggctaaggtggtggtcctggtaaacaaggtc
cacctcgtggaacaacatttccacaaagagttcaaacctcacctgggccctgaatacaag
ctggaggcagtcagtggagacagtgtacagaaggacttttttggaaaagtggtggaaaaa
tcagacgtggtcatctgcactgcacagatcttatttaatgcgctgactaacacggaggaa
accaaacatgttgagctctcagacattactctactgattattgatgagtgccaccacacc
cagaaagaggctgtctacaacaagattatgagatactatctggagaaaaaattgaaagga
gagcaaaaactgccacagatcctgggtctcactgcatcaccagggacagggggtgcaaag
attctggaaaaggctgtggagcatgtactgcagatttgtgccaacctggactcaaccata
gtttcaactaaagactgcactgccgagctgaaggagaaggtacccagaccctataagtca
atggacattgtggacaaaaggcctcaggatccatttggggatcacctgaaaagtatgatg
cagaagatccacaactttatgcctctacctccagacttcagactgagagagtctggcaca
caagaatatgagcaagatgtgatgacactggagcagagaggggtagaagagcaaaacaga
attctggcacaatgtgcactccatctcagggagtacaacgacgccctgctcatcaatgac
accctgcgaatgatcgatgcttatcgctccttagaggatttctacgataccaagaccgac
aattccatagatgaaacagacgacttcctggtgggacttttccaagagaatcaagtgaag
ctgaggaaaatagcagaacattctcagtatgagaaccccaagatgggcaaacttgaaact
gttcttctaaagcagtttggtccagatgtgcaatcaagggggatccttttctgtaaaact
cgtagaagcacccactgcctaaatgactgggtcctcaacaatagagtcttgcaggaagct
ggcataaaggcagcagtcctcacaggggctggaggtggcataagtcacatgacacagaat
gagcagacagacacaatccgcaaatttcgacagggtgctctcaacctcctgatctccacc
agtgtggctgaagaaggccttgacatccctgaatgcaacctggtggtacgctatggactg
cttacaaatgagattgcccagcagcaggccagaggacgtgcccgagcaccagaggctgag
tattcaatggtcggtcagacaggggggcaagaagtgcgtagagagggcatcaatgaactt
ttggaagagctgactggacaagccattgctaaaatccaagaaatgagcccccatgatttt
agcacaaagataaatgcgcttcagaaagaggcacttattggcagtaaggttgcagagatg
caccaaaaggagaagaggggtcgctttgatgcctccagagtccaacttttgtgtcgaaac
tgtttcaagtctgtggcctctggaagtgacattaaacttattgaaacactctttgtcaat
gtgaaccctgactttcagaagcactacaacgtcggtgagcaggttattaaagacaagatt
tttgaggactgggagcctgggtgctcaatcagttgcaatgactgcaacaaggactgggga
tttgagataaagtacaggaagatcgtcctgctgcccacaatagccatcaagaactttgct
ctgcaaacccctgagggcaggacgactgtgaagaagtggaagaatgttagtttcactgtt
gaagagttcgactttcaagaatacatccaagacaactttcctgacattactattgattga
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