Scomber japonicus (chub mackerel): 128379878
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Entry
128379878 CDS
T09718
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6-like isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128379878
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128379878
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
U-box type E3
128379878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
U-box
zf-CCHC_2
zf-CCHC
zf-C3HC4_3
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
128379878
NCBI-ProteinID:
XP_053195496
LinkDB
All DBs
Position
2:13486945..13503692
Genome browser
AA seq
1787 aa
AA seq
DB search
MSCVHYKFSSKLDYNTVTFDGLHITLSELKRQIMGRERLKATDCDLQITNAQTREEYTDD
EAHIPKHSSVIVRRTPLGGVKPAGRTFIVDRSDTAVVGSSRPTDSSPSMSFAQLTKTANL
VDANASEEDKIKAMMTQSNHEYDPIHYSKKAIGPPPAHYTCYRCGKAGHYIRQCPMLMIQ
DKSVEAPKSVRISKGIPQSFMVKAEPGTKGAMLTSTGEYAIPAIDAEAYAQGKKERPPFV
PHDQSSSEDDSDPIPDELLCPICNDLMTDAVVIPCCGNSYCDDCIRTALLDSEEHVCFTC
KQSDVSPDNLIANKFLRQAVNNFKNETGYTKHVRKQVQHTAPPPPRPLLVRPLHSRQQDP
LMANISQPPPTSLPTAAPQVQAAPPAPAAATTSDPTPPHAAAAAAEEHAASPVPAPVIDH
HSPMHSTSQGEPPPPGETDPEPIVKPESSGPSDHGPSESGSQGYHLTVIGHPPPQRPPHP
SGHQARPHHSHRGGGGGGGGGGGGGGGRHWDRSYRSRGEHPSTHLQNAPPPVPAPPVYPT
PSMYPPPPQSYPPPYASGPGLIPPPLSYQPQPVYAPGPPGLNPPWVAPGAQPPLIPLPPS
LAQPPLSKEDFYRQRHHRQDKVTSKLDEFTKDFHKELMKYRNAPKRRRPSYSRSRSYSRS
PFSRSPYTRSRSRSRSRSRSRSRSYSYSPSRSRSRSHGRSYPRSPYSRRNGRSYGRSRSR
SRSRSRSYGYRRSGSPRSPPPFRGGGWEGPEAAGPYRSRSRSRSPGGFRSRSPGGRKPPP
REIAPYELKGPSPGGHERWDRDSYRQWEKEYRDWYNKYYKDYDGQHPPLHHRGRGSRDRE
RDRMSPLNRDYSPQGRGRRGREERGGPPHHPPSSSSSGAKSSTKVLKTKKVKKKKTGDEP
EPSHQSVDRGDATPVRDEPMDEIPSLTKTPPISSKPSVGSATTKAPASKSTAAPVKPPTK
STSKTQSDKTKKDKGQKVKAKVKTEAVKVKSDKVKKKTGETVVPKKKESSSSSSSIAKPL
KTTKAKPEDAPNSTTPKKEKSKSSTARPPRPKTPPLSSQNLPLPHPLHDGPRSSHDMRGR
RDLPQGGGLLPLPHHPLLHLPPSPGDSRRRMGEEGRSLLGPPPGKVRRMDGLGGGGDILS
HSHISHQPPLQRLPHPSDRPGLLPLPGSREMGRGDPDRGPIRPLMDLQVKPLSQTQRRIK
LNRELGRKGSTETAPSDRSSSGPEKTSSTSERSSAPNVPEGDRASSAAESAGRKERSTSG
ERGVSKERPGSAGERLSGSDRVSDRSSGLDRDRERTSGLDRERDRDRGTGSERERDRERV
SGSSSQKASVTVEREAEGERLGRTERKNSSSRSGGGRSVSLDKMTIAEKCAVTKKTDPEE
KPSVSSKKGEGSERAAKSDRSVSKDRTERSVPSGEKPAAAHREAVKDAEVSSVKSKPRIS
RKALTSHSVSSTSSRSTQETKQDSEKEPRSVSSKPTEQPLPSPVNSRGRSPSVSPAPSPA
REEPLIQAPPRSKWEQEDDEEGQENGLSAPKEPSPVPQRSRGREGQTEAPKHVRSESRDA
PREERRGVVRGEEKKGRVPREEGKGGRAAQANSDKPTKTKIVREEGRGVRDEGRAGAREE
GRGGREEGRGAPAKEERAAESRGVGGGGREESRGPEPRRQRLCSDLGRETDEAAFVPDYS
EGEGSDTERGRSGSPSPSLGQGSNSPSPSNHSDSANTSTTTADKKKKKHKKHKKHKKHKK
HNSQEKEGVEHKEHKHKHKKKKHKKNKDKDGEEKEDKAEKTEEETPC
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtgttcattataagttttcttccaaactggactacaacacagtcactttcgat
gggctccatatcaccctcagtgagcttaaaaggcagattatgggccgggagcgcctcaag
gccacagactgcgacctgcagatcaccaatgcgcagactcgagaagaatacacagatgat
gaagcccacatcccgaaacactcgtccgtgatcgtccgccgcactccgcttggtggagta
aaacctgctggcaggacgttcattgtagatcgttctgacacagctgtggtgggatcgtct
agacccactgattcttctccctctatgtcattcgcccaactgaccaagactgctaacctg
gttgacgcaaatgcatcagaggaagacaagataaaagccatgatgactcagtcgaaccac
gaatatgacccgatacattactccaaaaaggcgatcggacctccacctgctcactacacc
tgctatcgttgtggaaaagctggtcactatattcggcagtgtcccatgctgatgatccag
gataagagtgtggaggctcccaagtcagtaaggattagtaaggggatccctcagagcttc
atggtgaaagcagagcccggcactaagggagccatgttaacgagcaccggagaatacgcc
atacctgctatagatgcggaggcgtacgcgcaaggaaagaaggagcgtcctccgtttgtt
cctcatgatcagtcgtcctccgaggatgattcagacccaatcccagatgagctcctttgt
ccgatctgcaacgacctgatgactgacgctgtggtcataccctgctgtggaaacagttac
tgcgatgattgtatcaggaccgccttgctggactcagaggaacacgtctgctttacgtgc
aaacagtcggatgtttcgcctgataacctcatagccaacaagttcctccgacaggctgtg
aacaactttaagaacgagacgggatacaccaaacacgtgaggaagcaggtccaacacaca
gccccgcctccgccgcgccccctgttggtcaggcctcttcactccagacaacaagacccg
ctgatggctaatatctctcaaccccctcctacaagtttacccaccgcagctcctcaagta
caggccgcgccccccgcaccggctgctgctaccacctctgatcctacgccacctcacgct
gctgctgctgctgccgaagaacacgccgcctcaccagttcctgcacccgtcatcgaccac
cattctcctatgcactcaaccagccagggtgaacctcccccaccaggtgagaccgaccca
gagcctattgtgaaaccagaatcatctggtccttctgatcatggaccctctgaaagtgga
tcccagggctaccatttaactgtcattggccacccgccacctcaaaggccacctcatcca
tcaggccaccaggcaagaccccaccactctcacagaggaggaggaggcggcggtggcggc
ggtggcggtggcggcggcggcagacactgggacaggtcctacagaagtagaggagagcac
ccttccactcacctccagaatgctccacctcctgttcctgctcctccagtctatccaact
ccgtccatgtacccaccacctccacagtcctacccccctccgtacgcctctggccccgga
ctcatccctcctcctctcagttatcagccccagcctgtctacgcccctggaccaccggga
ctcaaccctccctgggtcgcccctggtgcacaaccccctcttatccctcttccaccctcc
ctcgctcagccccccctctcaaaagaagatttctaccggcagcggcaccatcgtcaggac
aaagttacatcaaaactggatgaatttactaaagacttccacaaagagcttatgaagtac
agaaatgcaccaaagaggcgaagaccgtcttactccaggtcccgctcatacagccgctct
ccattcagccgctctccttacactcgctctagatccagatcaagatccagatccagatca
agatcacggtcttactcttattctcccagtcgatcccgttcacgctctcacggccggtct
tatccccgttctccttattctcgacgcaacgggcgcagttacggacgctcacgatcgaga
tcccgctctcgttcaagatcttatgggtatcggcgctccggctcaccgcgatctcctccc
ccgttccggggaggaggctgggagggaccagaagcagcaggaccctacaggtcaaggtca
cggtctcgctcaccgggcggcttccggagccgcagccccggcggacggaagccacctcct
cgagagatagcgccgtatgaactgaagggtccgagccccggaggccatgagcgctgggat
agagatagctaccgacagtgggagaaggagtacagagactggtacaacaagtactacaaa
gactacgacggccaacatccaccgctgcaccacagaggccgaggcagccgagaccgggag
agagacagaatgtccccgctaaatagagattactcccctcaggggagagggaggagaggg
agagaagagagaggcgggccacctcaccatcctccgtcatcttcctcatcaggagcaaaa
tccagcactaaagtcctaaagacaaagaaagtcaagaagaagaagaccggggacgagcca
gagccgtctcatcagtcagtggacagaggggacgccacacccgtcagagatgaaccgatg
gacgagatcccctcacttacgaaaacacctcctatctcctcaaagccttcagtcggctcc
gcaaccactaaggctccggcctctaaaagcactgctgcacccgttaaaccgccgaccaag
tccacgtcgaagactcaatctgacaagaccaagaaggacaaaggtcaaaaggtcaaagcc
aaagtaaaaacagaggctgtgaaggtcaagagtgacaaagtgaagaagaagacgggagaa
acagtggtgcccaaaaagaaagagtcctcctcctcgtcttcctctattgcaaaaccgtta
aagaccaccaaagccaaaccagaagatgcccccaactcaactacccctaaaaaggaaaag
agtaaaagctccacagcgagaccacctcgacctaaaacccctccactgtcctcccagaac
ctgccgctacctcatcccctccatgatggccctcgatccagccacgacatgcgagggagg
agagatcttcctcagggcggtggtctccttcccctcccccatcacccactcctccacctc
cctccctccccaggagacagtcggaggaggatgggagaggagggccgctccttactggga
cctccacccggaaaggtgaggagaatggatggactcgggggtggaggcgatatcctctca
cactcacacatctcccatcagcctccactccagaggctcccgcacccatcggaccggccc
ggccttcttcccttaccagggagccgcgagatgggccgaggagaccctgatcgaggaccc
atcagacctctcatggaccttcaggtgaagccactcagtcagactcagaggaggatcaag
ttgaacagagagctggggagaaaaggcagcacagagacagctccctcagacagatcatcc
tcaggccctgagaaaacgagctctacctcagaacgttcgagtgcccccaacgtcccagaa
ggagaccgagctagcagcgcagcggaaagcgctgggagaaaagagcgatctacctctggt
gagagaggagtctccaaagagagaccggggagcgctggagagagactgtcgggctcagac
agagtgtcagacagaagctcgggattggaccgagaccgggagagaacttcaggactcgac
agagaaagagaccgagacagaggtacagggtctgaaagagagagggaccgagagagagtc
tcggggtcaagctcacagaaggcgtcggttacagttgagagagaagctgaaggagagagg
ttgggcaggacggaaaggaagaactcgagcagtagaagtggaggcgggaggtccgtctct
ctggataaaatgaccatagcagaaaaatgcgccgtcaccaagaagacagaccctgaagag
aaaccaagcgtgtcctctaagaaaggagaggggtcagaaagagctgctaaatctgacagg
agtgtgtccaaggacagaacggaaaggagcgtcccctcaggagagaaaccagctgctgct
cacagagaagcagtgaaagatgctgaggtgtcttctgtgaagagcaaacccaggatcagt
cgaaaggctttgacaagccacagtgtgagttccaccagcagtaggtcaactcaagagacg
aaacaagactcagaaaaagagccgagaagtgtgtcctccaaacccacagagcagcctctg
ccaagcccggtgaacagccgtggccgcagccccagtgtcagcccagctcctagccctgcc
agggaggagccgctcattcaagcacctcctcgctccaaatgggagcaggaagacgatgaa
gaggggcaggaaaatgggcttagtgcacctaaagagccctcacctgtgccgcagaggagc
cgaggcagagaggggcagaccgaagcacctaaacatgtccggagcgagagccgggatgct
ccaagagaagagaggagaggagtagtgaggggggaggagaagaaagggagagtgccaagg
gaggagggtaaaggtggcagggcagcccaggcgaattctgacaaaccaaccaaaactaaa
attgtgagggaggaggggagaggcgtcagagacgaagggagagctggagcaagagaggaa
ggaagaggaggacgagaggagggaagaggagcgcccgcaaaggaggagagagcggcagaa
agcagaggagtaggaggaggtgggcgagaggagagccgtggcccggagcccaggaggcag
cgcctgtgctccgacctgggtcgcgagaccgacgaggccgccttcgtcccagactacagc
gaaggagaaggctcggacacggagcgggggaggagcggcagccccagcccgtccctcggc
caaggctccaacagcccctctcctagcaaccacagcgactcggcaaacacctccaccacc
acggcggacaagaagaagaagaaacacaagaaacacaaaaaacacaaaaagcacaagaag
cacaacagccaggagaaagagggagtagaacacaaggagcacaagcacaaacacaagaag
aagaaacacaaaaagaacaaagacaaagacggagaagaaaaggaagacaaggcggagaaa
acagaggaggagacaccttgctaa
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