Scomber japonicus (chub mackerel): 128379940
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Entry
128379940 CDS
T09718
Name
(RefSeq) heparanase-like
KO
K07964
heparanase [EC:
3.2.1.166
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo00531
Glycosaminoglycan degradation
sjo01100
Metabolic pathways
Module
sjo_M00078
Heparan sulfate degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00531 Glycosaminoglycan degradation
128379940
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sjo00536
]
128379940
Enzymes [BR:
sjo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.166 heparanase
128379940
Glycosaminoglycan binding proteins [BR:
sjo00536
]
Heparan sulfate / Heparin
Enzymes
128379940
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_79n
DUF1087
Motif
Other DBs
NCBI-GeneID:
128379940
NCBI-ProteinID:
XP_053195553
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All DBs
Position
19:complement(31219509..31244234)
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AA seq
542 aa
AA seq
DB search
MKCELVLVSALLWITDGFLSNFTGTCLPGLTERAAGESVRVSVDLSRLVHRVDPRFLSVT
IDASLASEEKFMYLLSAPKVRTLARALTPAFLRFGGTRQDFMVFTPQYDRLSTFNAERSC
EELRLPSWLEEKLKRDWTQQQSVLMREDLQRKYKRLKFTEFTVDLLHSFTNCSGMDLIFG
LNALLRTADNSWNSSNARTLMQYCESRQYNMSWELGNEPNSFEKKAGIRVDGYQLGLDFT
RLREMMSESKLYRHAGLYGPDVGQPRDHRVDLLEGFLQSGADAVDACTWHHYYVNGRDTS
LEDFLDPEVFDTLTLKTNEVLEKVKLASPGKSVWLGETSSAYGGGALGLSDTFVAGFMWL
DKLGLAARLGLDVVMRQVFVGSGSYHLVDENLDPLPDYWLSLLYKRLVGPEVLKIEAFSN
LGRSKRVRLYLHCANRKSYGAGAVTLISMNLSKKPARICVPALASSSTLEAFVLQSEQPG
EEGLYSRSVRLNGDTLTMVDDETLPELKGVRLPAAEHLQLPAYSLAFFVLTEAQAAACRT
LH
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgtgagttagtgttggtctctgctctcctctggatcaccgacggattcctctcc
aactttaccgggacgtgtttaccgggactcacggagcgggctgccggggagtcggtgcgt
gtctccgtggacttgtcccggctggtccaccgggtcgaccctcgctttctgtccgtcacc
atcgatgccagcctggcttcagaggagaagttcatgtacctcctcagcgctccgaaggtc
cgaacgttggcccgagctttaactccggcgtttctgaggtttggaggaaccagacaggac
ttcatggtgttcactcctcagtatgatcggctcagcacgttcaatgcagagcgatcctgt
gaggagctgcggctgccttcatggctggaagagaagctgaagagagactggactcagcag
cagtcggtcctgatgagagaagacctgcagaggaaatacaaacgcctcaagttcacagag
ttcactgtagacctgctgcactccttcactaactgctcagggatggatctgatcttcggg
ctgaacgctctgctccggacggctgataacagctggaacagcagcaacgctcgcacactg
atgcagtactgtgagtccagacagtacaacatgtcctgggagctcggcaacgaaccgaac
agctttgagaagaaggcgggtattcgtgtggacggataccagctcggtctggatttcact
cgtctcagagagatgatgtcagaatccaaactttaccgccacgccggtctgtacgggccg
gacgtgggccagccgcgagaccaccgggtggatctactggaggggttcctgcagagcgga
gcagatgcagtggacgcttgcacctggcaccattattacgtgaatggaagagatacgtcg
ttggaggattttctggatccagaagtttttgacactctgaccttaaagaccaatgaagtc
ctggagaaagtgaagctagcgtctccggggaagtcggtgtggctcggagagacgagctca
gcttacggaggaggagctttaggactgtcggacacgttcgtcgctggattcatgtggttg
gataaattaggactggcagccagactgggcctggatgtggtgatgaggcaggtgttcgtc
ggctctgggagttaccacctggtcgacgaaaacctggatccacttcctgattactggttg
tctctgctctataagagactcgttggaccggaggttttaaagatcgaagccttttctaat
ttgggccgaagtaaaagagtgaggctgtatctgcactgtgccaacaggaagagctacgga
gccggagccgtcacgttgatatccatgaacctgagtaagaagccagccaggatctgtgtg
ccggcgctcgcctcctccagcacactggaagcttttgttcttcagtctgagcagccggga
gaggaaggcctctactccaggtctgtgagactcaacggagacacgctgacgatggttgat
gatgaaactcttcctgagctgaaaggagtccgtctgccagctgctgaacatctgcagctt
cctgcgtactctctggccttcttcgtcctcaccgaggctcaagctgcggcctgcaggacg
cttcactga
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