Scomber japonicus (chub mackerel): 128380018
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Entry
128380018 CDS
T09718
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128380018 (vldlr)
Membrane trafficking [BR:
sjo04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
128380018 (vldlr)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF
Motif
Other DBs
NCBI-GeneID:
128380018
NCBI-ProteinID:
XP_053195653
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Position
19:complement(6333515..6399128)
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AA seq
864 aa
AA seq
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MVTSTPGFLLLPMLICLQHCVDVHGTKTECEASQFQCGNGRCIPSVWQCDGDEDCTDGSD
ENSCVKKTCAEVDFVCRNGQCVPKRWHCDGEPDCEDGSDESVEICHMRTCRVNEFSCGSG
STQCIPVFWKCDGEKDCDNGEDEVNCGNITCAPNEFTCASGRCVSRNFVCNGEDDCGDGS
DEVECSPSSCGPSEFQCGNSSCIPASWVCDDDVDCQDQSDESPSQCGRHPTPPAKCLSSE
MQCRSGECIHKKWRCDGDPDCKDGSDEANCPVRTCGPDQFKCDDGNCILGSRQCNSVRDC
TDGSDELNCKNMTQCNGPEKFKCRSGECIEMSKVCNKARDCPDWSDEPIKECNINECLLN
NGGCSHICKDMAIGFECDCTPGLQLIDHKTCGDINECLNPGICSQICINLKGGYKCECHN
GYQMDPTSGVCKAVGKEPSLIFTNRRDIRRLGLERKEYTQIVEQQRNTVALDADFDQQMI
FWADLGQKAIYSTVLDKRGDISTHNKVIDNVQTPVGIAVDWIYKNLYWSDLNTKTISVAN
FNGTKQRVLFNRGLKEPAAIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVATDIQW
PNGITLDLIKGRLYWVDSKLHMLCSVDLNGDNRKKVLQSSEYLAHPFALTVFEDRVFWTD
GENKAIYGANKFTGSDVTTLASNLNDPQDIIVYHELIQLSGTNWCTEKGANGGCSYMCLP
APQINKHSPKFTCVCPEGQELAADGFRCRPDPSTKGASKDDGKALTQPPPEANVSTSIQV
NSTARGSAAAWAILPVLLLAMAAAGGYLMWRNWQLKNQKSMNFDNPVYLKTTEEDLNIDI
TRHSASVGHTYPAISIVSTDDDLS
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgtccacaccggggttccttctgctgccgatgctaatatgtctccagcactgc
gttgacgtccacggaactaagacagaatgtgaggccagccagtttcagtgtgggaacggt
cgctgcatcccgtccgtctggcagtgcgacggagacgaggactgcacagatggcagcgac
gagaactcctgtgttaaaaagacttgtgccgaggtggactttgtgtgtcgtaacggccag
tgtgtccccaagcggtggcactgcgacggggagccggactgtgaggacgggtcggacgag
agcgtagaaatctgccacatgaggacgtgtcgtgtgaacgagttcagctgcggctccggc
tccacccagtgcatccccgtcttctggaagtgtgacggagagaaggactgcgacaacgga
gaggacgaggtcaactgtggtaacatcacctgcgcccccaacgagttcacatgcgccagc
ggccgctgcgtctcccgcaactttgtgtgcaacggcgaggacgactgcggcgacggctct
gatgaagtggagtgcagcccgtcctcttgcggccccagcgagttccagtgcggcaactcg
tcgtgcatcccggccagctgggtgtgtgatgatgacgtcgactgccaggaccagtccgat
gagtctccgtctcaatgcggacgtcacccgacgccaccggccaagtgtttatccagcgag
atgcagtgccgctcaggagagtgtattcacaagaagtggagatgtgacggagaccccgac
tgcaaggacggcagcgacgaagcaaactgtcctgtgcgcacatgtggaccagatcagttc
aaatgtgatgatgggaactgcatcctgggcagcagacagtgtaacagcgtcagagactgc
accgacggctcagatgaactcaactgcaaaaacatgactcagtgcaacgggccggagaag
ttcaagtgtcgcagcggggagtgtatcgagatgagcaaagtgtgcaacaaggcccgagac
tgtcccgactggagcgacgagcccatcaaggaatgcaatataaacgagtgtctcctgaac
aacggcggctgctcccacatctgcaaagacatggccatcggctttgagtgtgactgcaca
cctggactgcagctcatagaccacaagacctgcggagacatcaatgagtgtttgaacccc
ggcatctgcagtcagatctgtatcaacctgaagggaggatacaagtgcgaatgccacaac
ggctaccagatggatccgaccagcggagtctgcaaagctgtcggtaaggagcccagtctg
atcttcactaaccggcgtgacatccgtcgtctgggcctggagaggaaggagtacactcag
atagtggagcagcagaggaacacggtggctctggatgcagactttgaccagcagatgatt
ttttgggctgacctgggccagaaggccatatacagcactgtactggacaaacgaggggac
atcagcacccacaacaaagtgatagacaacgtccagactcccgtggggatcgccgtggac
tggatctacaagaacctgtactggtccgatctcaacaccaaaaccatctcggtggccaac
ttcaacgggaccaagcagagagttctgttcaacagaggcctcaaagaaccggccgccatc
gctgtggatccactgtctgggtttctgtactggtctgactggggcgagccagccaagatt
gagaagtccggtatgaatggagtggacagacaagttctggtggcgacggacatccagtgg
cctaatggaataaccctcgatctgatcaaaggcaggctgtactgggtggactctaagctg
cacatgctctgcagcgtcgacctgaacggagacaacaggaaaaaagtcctgcagtcttcc
gaatacctggctcaccccttcgctctcaccgtttttgaggatcgcgtcttttggacagac
ggggaaaacaaagccatctacggcgcaaacaagttcaccggctccgacgtcacgacgctg
gccagcaacctgaacgacccgcaggacatcatagtttatcacgagctcatccagctatca
ggtactaactggtgcacagagaaaggtgcaaacggaggctgcagctacatgtgtctgcct
gctccacaaatcaacaaacactcccccaaattcacctgtgtgtgtccagagggacaggag
ctggctgctgacggcttccgctgcaggcccgacccttccaccaaaggtgcctcaaaggat
gatgggaaagctcttacgcagccgcccccagaagcgaatgtgagcacatcgattcaggtg
aactccacagccagagggtctgctgctgcctgggccatactgccagtcttgctgctggcg
atggcggcggccggcggatacttgatgtggaggaactggcagctgaagaaccagaagagc
atgaacttcgacaaccccgtctacctgaagaccacagaagaggacctcaacatcgacatc
acacgacacagcgccagcgtgggacacacctaccccgcgatttcgatagtgagcacagac
gacgatttatcgtga
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