Scomber japonicus (chub mackerel): 128380028
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Entry
128380028 CDS
T09718
Symbol
brcc3
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03440
Homologous recombination
sjo04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128380028 (brcc3)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
128380028 (brcc3)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sjo01002
]
128380028 (brcc3)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128380028 (brcc3)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128380028 (brcc3)
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128380028 (brcc3)
Peptidases and inhibitors [BR:
sjo01002
]
Metallo peptidases
Family M67
128380028 (brcc3)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
128380028 (brcc3)
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
128380028 (brcc3)
BRISC complex
128380028 (brcc3)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
128380028 (brcc3)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
128380028 (brcc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
TEDC1
Motif
Other DBs
NCBI-GeneID:
128380028
NCBI-ProteinID:
XP_053195670
LinkDB
All DBs
Position
19:6283087..6284553
Genome browser
AA seq
260 aa
AA seq
DB search
MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGQVENARIVHIHSVIILRRSDKRKDRV
EISPEQLSAASTEAERLADMTGSPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMLDQCFV
GLIFSCFIEDKNTRTGRVLYTCFQSVQAQKGSEYERVEIPIHVVPREAIGKVCLESAVEL
PRILCQEEQDTYRKIHSLAHLDPVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQ
QSIVELQREKEKLLQELAAL
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgagcgctgttcacctggagtccgacgccttcctggtgtgtatgaaccacgca
ctgagcacggagaaagaggaggtgatggggttgtgtataggacaggtggagaacgccaga
atagtccacatccactctgtcatcatcctccgccgctccgacaagaggaaggaccgggtg
gagatctccccggagcagctgtcagcggcttccactgaggcggagcggctggctgacatg
accggcagcccaatgcgtgtcgtcggctggtaccactctcaccctcacatcaccgtgtgg
ccctcccatgtagacgtgcgaacccaagccatgtaccagatgttggaccagtgcttcgtc
gggcttatcttctcctgcttcatcgaggacaagaacacgagaaccgggcgagtgctgtac
acctgcttccagtcggtgcaggctcagaagggatccgagtacgagcgtgtggagatcccc
atccacgtagtgccgagggaagccatcggtaaagtgtgtctggagtctgccgtagagctg
cctaggatcttgtgtcaagaggagcaagacacctaccgtaagatccacagcttggcacat
ctggacccagtcaccaagattcacaacggctccgtattcactaagaatctgtgcagccag
atgtctgcggtgagcgggccgctgctgcagtggttggaggatcggctggagcagaatcag
cagagcatcgtggagctgcagcgggagaaggagaagttgctgcaggagctggctgctctg
tga
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