Scomber japonicus (chub mackerel): 128380046
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Entry
128380046 CDS
T09718
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128380046
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
128380046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
128380046
NCBI-ProteinID:
XP_053195695
LinkDB
All DBs
Position
19:complement(17539339..17615484)
Genome browser
AA seq
2112 aa
AA seq
DB search
MTTTTNWVANGASLEDCHSNIFSLAELTGIKWRCYSFRSGGEYGPVISAPAQDDPVLRSF
MRCVQANLLCVWRRKIKPDAKELWIFWWGEEPNLSDVIHHELEVAEEGLWECGLSYECRT
LLFKAVHNLLERCLMDKGFVRTGKWFFKPYELEEKSLGNSEHLSCSFSFFLHGESNVCTS
VEIAQHQPAYHITEHHIRLAQTSITPVQVILSPYGLSGTLTGQAYKMSDPATRKLMEEWS
YFYPMVLQQKEGSGENAKEEASQSYDRNCHVAVEVIVGGVRMTYPAALVLIAQGDLPVEQ
PPPVPAALGLTREQNHCSVPLTPPTSPEQPCSADSGFVTSISSVPTPDSSMGVTSISPKH
SVKKLSCHVVHQAWRECYLNQPQHVRNQRTEVTPKTEVPNGVTTWDFNDLGARAPCSCSR
LKQQKLNMTTTSTANPQTSANTTQSSGPSLYLPSLPKHKTSDKTEKADKQSRRPAMIPFH
HRVSVTQETTLEQDSPGGPQLGDLVALEPPLEPLATLTNCKYPKPLSNGRKASESLLLSP
MSPLPPTLSPHPRVQDPEVLDGPVDMHVCPDGASGLGMITSETAAYSALLKLRENGAGWW
RGFRTPRSDKTDCRSAELPTDLLEEVKTDTAAEGIPLKRLYTQTHKRFKISEERVRDHVQ
TLGLFQQPVVEVLREPGDDPYDFKEGDIEYTFSTSKRLKSQGREPSKKAKGEEITSNGAL
PDGKDAMSIFNSAPKSDESSQDDGAAKANPSLTREKDLVVNISDLDNIFDEDEEELGHST
KLPVSTEDRPLGKEGRVAVPYPSTVADLQRMFPTPPSLEQHPAFSPIMTYRDTPSQEPPV
PSGAADHFPPLASAQHTEYRMDMEEGMISPRQEDFKPQIGSSMFAPLACLPSQSLPPLEI
PEQCYYRQSWALMPKMEHFPTVMHPQNTAFIRDGYTNVPSVNTLTDQEYGQMSATTASVS
TTVGILPSPATPRFSVPTPRTPRTPRGINTASSGQGSVKQDGTELSSPVSTPSTSLILSS
VEPLARPGPSLPEAHSLYSILLLSDSVLNVFKDRNFDSCCICACNMNVKGADVGVYIPDS
TCEDQYRCMCGFSAIVNRRLAHGTGLFLEDELDIYGRSSEVGRAAERRLALCRRDPTMGD
PRTKRPQDAAPASPSVMILLKEQCSQPISSLASLHLPISCSCHGRKGALLQSWMSEKQWA
DGSDACVECYNALEQGLQYVDNPTGGKVDPAVVRSTALHSWTHTNVVDMSMLSSQDMVRM
LLSLQPFLQDAIQKKRTGRTWENIQHVQGPLTWQQFHKMAGRGSYGSEESPEPLPIPTVL
LGYDRERDFLALSPLALPFWEKLLLEPYGGQRDVAYVVLCPNSPSLLAAAQAFFQELSAV
YETCRLGKHRPLAKVSRDGIVRVGEEVEPEKLEELGVDQWLTGPWAGQQHTDNLSKLKLY
AYACKQQLGPQLSGLPLDSSLLLPPKVQPPLNPTSSTQPASAGQPQGWATDAEQAAGTVS
SANASTPTGAVSGQMGETNHGGTSESKGPSSTTPQANTPAETPELTAEQARIGIPTVADS
MESHTNPPAIVIYIVDAFLSSNGTRNEGGEEEEGDDVEAGSIWLLGLLRCYTEMLQTLPE
TMRPALMLQVVPCQYLLQPASGESHFYLQHLRSLAFSCYSQCRRLMPQQTHIKSLTGFGP
VSTVNSVLKSPEHPSPVQLYCPPFVLGPTRPKQPEQGEIWAEIPPKYNVLYVGYCLSHDQ
RWILVSCTDQQGELLETCIINIDVPNRARRPKVSARKMGLQKLWEWCIGIIQMTSLPWRI
VIGRLGRLGHGELKDWSSLLGEHSLHSIGRQLREACRMCGISAADSPTILSACLVAMEPQ
GSLVIMPDAVTMGSVFGRSTALNLQTSQLNTPQDASCTHILVFPTSATTQLAPSSYPTED
NNDDMFDLPFPDELENDIGHDMMLITGNLHPSPNTSPVPSPGSPSGMGIGSHFQHTRSQG
ERLLSRDNPPEELKQQPLALGYYVSTAQANGLPHWFWASCPQAESQCPLFLKASLHHHIS
IAQSDELVSDKTKRTPHPLDSKTTSDVLRFVLEQYNALSWLTCTPATQDRQSCLPVHLAV
LIQMYNAILNML
NT seq
6339 nt
NT seq
+upstream
nt +downstream
nt
atgactacaacaacgaattgggtggctaacggggcaagccttgaggactgccactccaac
atcttctctctggcggagttgacaggcatcaagtggcgatgctacagcttccgcagtggc
ggggagtacgggccggtgatctcagccccggcccaggacgacccggttctccgcagcttc
atgcgctgtgtgcaggccaacctgctgtgtgtatggcgacgcaaaatcaagcccgatgcc
aaggagctctggatcttctggtggggtgaagagcccaacctctctgatgttatccatcat
gagctggaagtggctgaggaggggctttgggagtgtgggctgtcctacgagtgccgaact
ctcctgttcaaggctgtacacaacttgttggaaagatgtttgatggataaaggatttgtg
aggactggaaagtggttcttcaagccatatgaactggaagaaaagtctttgggcaacagt
gaacacctatcatgctccttctccttcttcctccatggggagagcaacgtgtgcacaagt
gtggagattgcccagcaccagcctgcgtaccacatcacagaacaccacatccgccttgca
cagacctccatcacaccagtacaagtgatcctgagcccttacggactgagcggcactcta
acaggtcaggcctacaagatgagtgacccagcaacacggaagctgatggaggagtggagt
tacttctaccccatggtacttcagcagaaagagggaagtggagagaacgcaaaagaagaa
gcgagccagtcctatgatcgcaactgtcacgtggcagtggaggtcatcgtaggtggagta
aggatgacctatccagctgctcttgtgctaattgcccagggggacctcccagtggagcag
cctccacctgttcctgcagctctgggcctcaccagagagcagaaccactgcagtgtgccc
ctcacaccgccaacgtcaccagagcagccctgctcagcggacagtggctttgtgacttcc
atctccagtgtcccaacaccagacagcagcatgggggtcactagcatcagcccaaagcat
tctgtgaagaaactgtcttgccatgtggtccatcaggcctggagggaatgctatctcaac
cagcctcaacatgtacgaaatcagcgaactgaagtgacgccgaagacggaggtgccaaat
ggagtaaccacatgggacttcaacgatctgggagcgagagcaccctgcagctgctccagg
ttgaagcagcagaagttgaatatgactacgacatccactgccaacccccagactagtgcc
aataccactcagtcctctggcccgtcattataccttccctccctgcccaaacacaagacc
agcgacaagacagagaaggccgataaacagtccaggaggccagctatgattccattccac
caccgtgtgtctgtcacgcaggagaccactctggaacaggactcaccaggagggccccag
cttggtgatcttgtggcgctggagccacccttggagcctttggctactctgacaaactgc
aaatatcctaagcctctctcgaatggcaggaaagcttcagaatccctcctcctttcacct
atgtcgccacttcctcctacactcagccctcatccccgggtgcaggacccagaggtcctg
gatgggcctgtggatatgcatgtctgtccagacggggcttcaggactggggatgatcacc
agtgagacagctgcgtattcagctctgctgaagctgagggagaatggggctggctggtgg
agaggtttcaggactcccaggtctgataagactgactgcagatctgcagaactccccact
gatttattagaggaagtgaagacagacacagccgctgagggaattccgctgaagagacta
tacacacagactcacaagagatttaaaatctcagaggagagggtgagggaccacgtccaa
actttgggtttgttccagcagccagttgtggaggtgctgcgggagcccggggatgatccc
tacgacttcaaggaaggagacattgagtacactttctccacttccaagagattaaagagt
caagggcgagaacccagcaagaaggccaagggggaagaaatcaccagtaatggtgcactt
cctgatggcaaagacgctatgtctattttcaactctgctccaaaatcagatgaatcaagt
caggatgacggagctgccaaagccaatccttctctgaccagagaaaaagacctggtagtc
aacatctctgatctggacaacatatttgatgaagatgaggaggaactagggcactcaacc
aagctaccagtgtcgacagaagatcgccctctggggaaggaagggagagttgcagtacct
tatccatcaacagtagcagacctccagcggatgttccccaccccaccttctctagagcag
catccagccttctctcccatcatgacgtatcgtgacaccccgagccaggagccccctgta
ccaagtggagcagctgaccactttccccctttagcttccgcccagcatactgaatacagg
atggacatggaggagggcatgatcagtcctaggcaggaggatttcaagccacagataggc
tcctccatgtttgctccacttgcctgcctacctagccagagtctaccgccactcgaaatt
cctgagcaatgctactaccgtcaatcctgggctctcatgcccaaaatggagcatttcccc
acggtcatgcatcctcagaacacggctttcatcagggacggatacacaaacgtccccagt
gtcaacaccctcacagaccaagagtacggccagatgagtgccaccactgcctctgtgagc
accactgttggcatcctcccgtctcctgcaactcctcgtttttctgtgccaactccacgc
actccacgtacaccgaggggtattaacactgcaagctctgggcaaggttcagtgaagcag
gatggtactgagcttagctccccggtctccaccccctccaccagcctgattcttagctca
gtagaacccttagctcggccaggaccctccctgcctgaggcccacagcctgtactctatc
ctcctgctctcagactccgtcctcaatgttttcaaggatcgcaactttgacagctgctgt
atctgtgcctgcaatatgaatgtcaaaggagcagatgtgggagtgtatattcctgattcc
acctgtgaggatcagtaccgctgtatgtgtggctttagtgccattgtgaacaggcggtta
gcccatggtacaggcctcttccttgaagatgagctggatatttatggtcggtcatcggaa
gtaggccgggcagctgagaggaggctggctctttgcaggcgggacccaactatgggagat
ccaagaaccaagcggccccaggacgcagctcctgcttctccctcagtcatgatcctcctg
aaggaacagtgctcccagcctatttcttccctggcatcactgcatctccctataagctgt
tcctgccatggccgcaagggggcactgctccaaagctggatgtctgaaaagcagtgggca
gatgggagcgatgcctgtgtggagtgttataatgctctggaacagggactgcagtatgta
gataatcccacgggagggaaagtggatccagctgttgtcagaagtacagctcttcactcc
tggactcatactaatgtggtggacatgagcatgttgtcgtcccaagatatggtccgtatg
ctgctttcgctgcagcctttcctacaggatgccatccagaagaagagaacagggcggacc
tgggaaaacatccagcatgttcagggtccactcacttggcagcagttccataagatggct
ggaaggggctcttacggttcggaggagtcaccggaacccttgcccatccctacagtgtta
ctcggctatgatcgggagcgtgacttcttagcgttgtccccattggcattgcccttctgg
gagaagttgctgctggagccttatggtgggcagcgggatgtggcatatgtggtgctgtgt
cctaatagtccctctctgctggctgcagctcaagccttctttcaggagctcagtgctgtt
tatgagacatgccgcctcgggaagcaccgtcctcttgccaaggtgtccagggatggcatt
gtgcgtgtgggggaggaagtggagccagaaaagctggaggagctgggcgtggaccagtgg
ttgactggaccctgggctggacagcaacacaccgacaacctcagcaaacttaaactttac
gcttatgcctgcaagcagcagctaggtccccagctatcaggccttcctctggacagcagt
ctcctgttgcctcccaaagttcagcctcccctaaaccccacatcctcaacccagcctgcc
tctgctggtcagcctcaaggttgggccactgatgcagaacaagctgcggggactgtcagt
tcagcaaatgcttcgactccgactggagcagtctcaggccagatgggggagacaaaccat
ggaggaaccagcgagtctaaagggccttctagtaccacaccgcaagccaacacaccagca
gaaacccctgagctcactgcggagcaagccagaatcggcatccccactgtggctgactcg
atggagagtcacaccaacccaccagctatagttatttacatagtggatgcttttctcagc
tcaaatggaacaagaaatgaagggggagaggaagaggagggtgatgatgtagaggcagga
agcatttggctactggggcttcttcgctgctacacagagatgctgcagactttgcctgag
acgatgagaccagcactgatgctacaggtggtaccatgccagtatcttctccagcctgct
agtggggagagccatttctacctgcaacacctgcgctccctggctttctcctgttactcc
caatgcagacgtctgatgccccagcaaacacatatcaagtccctgactggcttcgggcca
gtgtccactgtcaattctgtgcttaagagtccagagcatcccagcccagtgcagctgtac
tgtcccccattcgtccttggtccaacccgtcccaaacagccagaacaaggagagatatgg
gcagagattcctcccaaatacaatgtgctctatgttggatactgtctatcacatgaccag
cgctggatcctggtgtcctgtactgaccaacaaggagagctcctggagacctgtattatc
aacattgatgtacctaacagagcgcggcgtccaaaagtatcagccaggaagatggggcta
cagaagctatgggagtggtgtattggtatcatccagatgacgtcactaccatggagaatt
gtgattggtcgacttggcagactggggcatggtgaacttaaggactggagctcactcctt
ggggagcactctctccattcaatagggcgccagctgagggaggcctgtcgaatgtgtggg
atctcagctgctgactcccccactattctcagcgcctgcctggtagccatggaaccgcag
ggctccttagtgatcatgcctgatgcagtaaccatgggttcagtgtttggccgcagtact
gctttgaacttgcagacctcgcagctgaacacacctcaggatgcttcctgtacacacatc
ctagtcttcccaacctccgccaccacccagctggcaccaagctcctaccctactgaggac
aataatgatgacatgtttgatctgccctttcctgatgaactggaaaatgacattggccat
gacatgatgctgatcacagggaacctccacccttccccaaacacctctcctgtgccctcg
cctggctctccgtccgggatgggaataggatcacatttccagcacaccaggagccaggga
gaacgcttgctgtccagggacaatccaccagaggagctaaagcagcagccgttggctctg
ggctactatgtctccaccgcacaagcgaacggacttcctcactggttctgggcttcctgc
ccacaggctgagagccagtgtccacttttcctcaaggcgtctctccaccaccacatctcc
atagcccagtcagatgagctggtgtcagacaagactaagaggacccctcaccccttagat
tcaaagaccacctctgatgtgctcaggtttgtattggagcagtacaacgccctctcctgg
ctgacgtgtacacctgccacccaagaccgccagtcctgcctgcccgtccacttggctgta
ttgatccagatgtacaatgccatcctgaacatgctttag
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