Scomber japonicus (chub mackerel): 128380396
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Entry
128380396 CDS
T09718
Symbol
rc3h2
Name
(RefSeq) roquin-2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128380396 (rc3h2)
04121 Ubiquitin system [BR:
sjo04121
]
128380396 (rc3h2)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
128380396 (rc3h2)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128380396 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf_CCCH_4
zf-CCCH_UNK
Prok-RING_4
zf-C3HC4_2
zf-C3HC4_4
zf-RING_4
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
128380396
NCBI-ProteinID:
XP_053196178
LinkDB
All DBs
Position
19:complement(14075074..14101562)
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AA seq
1132 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSSGHQPISLGCSHTVCKTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLQLVGAQVPDVQPVSLSSAAEVEHYEVCRVCVEELALYLKPISGAKGVAT
LSPSVLSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLTSLRPHLELLANI
DHNPDDPAPSWEELESVMLAVKLVVHGLVEFIQNFSKKSHDTPQPQANSKYKTSMCRDLR
QQGGCPRGTNCTFAHTQDELEKFRLRNKKSSSVGRAFPLAPGGLKGTGDNTEGVTGLTHP
QLISRGADMMEEMKRAVPNGSNGANGSNGLSRTTSGSTEQKPTSPPRTPVSHSATSSPLN
TVGRGDGGGPIPKHGQFMLRAPHPSQASEMYYQEPHSGYDTDHYQSTSGSYYTSTLHPSH
KPCLARFLRSSNVPESSLPPSIGPPPSSYPSDPQTPHPSSSSSSGYPPHPPRDRMGPPPA
FHPHPGQPQYGPLAPAHGVYAPLYDSRRVWRPQLYHREDARSNSLPPEVLHSSVYQPPLR
ERFNSLDSNYCSGAEHRAGLHRDYGRVPLGYEDLFRRKQEQWAHHHHHHNTNRPSQSSPI
FTIDFGTEHVESSGGQCVGCRYRGEESLAHYSPWSCGTIGPCISPFEPEALTHSAPHSCS
EHSEMDSNGGGGGGGVSSGGVGKRWLHSLDHYRRLKDEDPIIPFSEGPIISKWGAISRAS
RTGYHTTDPVQATACQGSANTTPINFKDYNPHLDHSDYRWSSRGSDSSSHSSFLEGEQLC
ASELHRRRTSLSSGEKIVSDLQTHQTAYSQDRDRVCDRADSEPDPDRDIELELCALDMED
SDHQEIKSQDSLDLATPQSQDASHLLPPTCSSPLLSSPVEEHALAEGPSTEKMDAHLLKK
MAFRKSLSPAGLVSGGLGVGKLVLRTGPPRLGDSSTRVCPEKPGTEMLLNGS
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcggcccagtggacagagttcctgtcctgtcccatctgctacaatgag
tttgacagcagcggtcaccagcccatcagcctgggctgctcccacactgtgtgtaagacc
tgcctacacaagctgcaccgtaaggcctgcccctttgatcagacaccaatcagcactgat
attgacctgttgccggtaaactgtgccctgctgcagctggtcggagctcaggtcccagat
gtgcagccggtcagcctgagtagtgcggcagaggtagagcattacgaggtctgcagggtt
tgtgtggaggagcttgctctctatctaaaacctatcagcggagcaaaaggtgtggcgacg
ctgagtcccagcgtgctcagtcggcccatgcagaggaagctggtgacgttggtgaactgc
cagctggtggaggaggagggccgtgtgcgggcagtgcgagcaggtcggtcgctgggtgaa
cgaacagtaaccgagcttatcctgcagcaccaaaacccccagcagctctctgccaacctc
tgggcagcagtgagggcgcgaggctgccagttcctggggcctgctatgcaggaagatgca
ctgaagctagttttgctggctctggaggatggctcagcactgtcccggaaggtgctggtt
ttgtttgtagtccagaagctggaggctcggtttccccaggcctccaaaaccagcataggc
cacgtggtgcagctgctctaccgggcctcttgcttcaaggtgactaagcgtgatgaggac
tcctcactgatgcagctgaaggaagagtttcgtacatacgaggctctcaggagagaacat
gatgctcagattgtccacatcgccatggaagctggcctacgaatttcacctgagcagtgg
tcctctctgctgtacggagacctggtgcacaagtcacatatgcagtcaatcattgacaag
ctccagtctccagagtcatttgcgaagagcgttcaggagctgacaattgttctgcagagg
acaggagaccctgccaacctcacaagccttagacctcacctggagctactagctaacata
gaccacaatccagatgacccagcaccatcatgggaggagctggaaagtgtgatgctggct
gtaaagttggtggttcacggactggtggaattcatacagaacttcagcaaaaagagccac
gacactccacagcctcaggccaacagcaagtataagaccagcatgtgccgagaccttcgt
cagcagggaggctgtcccagaggaaccaactgtacatttgcacacacgcaggatgagctg
gagaaatttagactgaggaacaagaagagcagcagtgttggccgtgcattccctctagca
cctgggggcctcaaaggcacaggagataacacagagggagttactggcctgactcaccct
cagcttatctctagaggagctgacatgatggaggaaatgaagagagcggtgccaaatgga
tccaacggggctaacggttccaacgggctaagcagaaccacatcagggtcaacagaacag
aagcccacctctcctcccaggactccagtcagccactccgcaacgtcatctcctttgaac
acagttggacggggtgatggtggcggtcctatacccaaacatggtcagttcatgctgcgt
gcaccacatccttctcaggcgtcagagatgtactatcaggagccccactctggatatgac
acggaccactatcaatcaacctcaggttcctactacacatctactctccatccttcacac
aaaccctgcctggctcggttcctcagatcctccaatgtcccagaatcttctcttccacct
tccattggccctccaccatcctcctaccctagtgaccctcagacgccgcacccatcttcc
tcctcttcctcgggatacccgccacacccacctagagatcggatgggacctcctcctgcc
ttccacccccatccgggtcagcctcagtatgggcctctggcccctgcccatggtgtttat
gctcccctctatgacagcaggagagtatggaggcctcagctgtaccacagagaggatgcc
aggagtaactcactgcctccagaggtgctgcattcctctgtctaccagcctccactcagg
gagagattcaactctctagacagcaactactgctctggagccgaacaccgtgcagggcta
cacagggactacggacgtgttcctctgggctatgaggatctattcagaaggaagcaggaa
cagtgggcacatcatcaccaccatcacaacaccaacaggccctcccagtcctcccccatc
ttcaccattgattttggaactgagcatgtggagagcagtggaggtcagtgtgtggggtgc
aggtacagaggcgaggagagtttagcacactattctccatggtcctgtggtactatcggc
ccctgcatcagcccctttgagccggaagcactcactcattctgcacctcactcctgctca
gagcactcggagatggacagtaacggaggtggaggtggtggtggcgttagcagtggtggt
gtgggaaagcgatggctgcattcattggatcactaccggcgattgaaagacgaagacccg
ataattccctttagtgagggacccattatatccaagtggggagccatatccagggcttct
cgcacaggctaccacaccaccgaccctgtccaagccacagcctgccagggcagtgccaat
accacgcccatcaactttaaagattacaacccacacttggatcacagtgactacaggtgg
agctccagaggatcagactcttccagccactccagtttcctagaaggtgagcagctttgt
gcatcagagctgcacagacgcaggacttctttaagcagtggagagaaaattgtgtctgat
ctgcaaacccatcaaaccgcctacagccaggatcgggacagagtatgtgacagggctgat
agtgaacctgacccggaccgagacattgagcttgaactgtgcgctctggacatggaggat
tcagaccaccaggagatcaagtctcaggactctttagacctggccaccccacagtctcag
gatgcttcccacctcctcccaccaacctgctcctctccactcctctcatcccctgtggag
gagcacgccctagcagagggtccttcaacagaaaaaatggatgctcacctgctcaaaaag
atggctttcaggaagtctctttctccagcagggttggtttcaggaggtctgggtgtcggc
aagcttgtgctacggactggacctccccgacttggggactcttctacccgagtgtgtcct
gaaaaaccaggaacagagatgctgctcaatgggagctaa
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