Scomber japonicus (chub mackerel): 128380512
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Entry
128380512 CDS
T09718
Symbol
ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sjo03009
]
128380512 (ddx54)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128380512 (ddx54)
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
Pre-60S particles
Helicases
128380512 (ddx54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
Motif
Other DBs
NCBI-GeneID:
128380512
NCBI-ProteinID:
XP_053196330
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All DBs
Position
19:16393529..16401363
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AA seq
861 aa
AA seq
DB search
MAQRKKKMTKKKRHTANREPELDSDCGDFELAAEVKDDDSQGKKMPRFPAQSDCLSDVEP
DTRELVRAQNKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKTVPVILDGKDVVAM
ARTGSGKTAAFLIPMFEKLKAPQAQTGARALILTPTRELALQTMKFTKELGKFTGLKTAL
ILGGDRMEDQFAALHENPDIIIGTPGRLMHVVREMNLKLNGVEYVVFDEADRLFEMGFAE
QLEEIIRRLPDTRQTLLFSATLPKLLVDFARAGLTEPVLIRLDVDSKLSDQIKLSFFHVR
VDDKAALLLYLLRNVVKPQEQTVVFVATKHHVEYVKELLSTEGLECAYIYSALDQTARKI
NIGKFVHRKAMVLVVTDVAARGIDIPLLDNVINYNFPSKPKLFLHRVGRVGRAGRSGTTY
SMICPDEMPFVYDLHLFLGRPLQIATPEHAQDADGVFGRVPQSILDDESSNLVTSHENSL
DLQNMHRVSENAYKQYLKSRPNPSPESVRRVKNTDLSIMAVHPLLGSGLEKMELDRLQIV
DAIKGYKSKSTIFEINSHSKTQASEVMRAKRSKDSRLVDKFSKHRDDLAAESRLHLSVHH
SNTDEASTHIADQEEDDDIMGVFSEVVGGKRRVLQEDGGQPKNKKSKQTGKDEDYYIPYR
PKDFNSERGLSLGGEGTAFDQQASSAVLDLMGDEGDRLNQHKQIMKWDRKRKRFVRETGR
EDQKKKLRLDGGQVIQNKKNKKNFYEEWKKKYRVDDGGAGSDGETGGGGRRPGGGRGRGR
RGPQFQSPGRPQQTPGGRRVRSELKTNEQILKQRKKDQKHQFLQGGGLKNLRNKNKKFLG
QVKKSGFGRGGQKKGKMKKRM
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaagaaagaagaagatgaccaagaagaagagacacaccgccaatagagagccg
gagctagactctgactgtggagactttgagttggctgctgaagttaaggacgatgattct
caaggaaagaaaatgccacgattccctgctcagtccgactgcctgtcagatgtggagcct
gacaccagggagctggtcagagcccaaaacaagaagaaaaagaagtctggaggatttcag
tccatgggtctcagttaccctgtatacaaaggggtcatgaagaaggggtacaaagtccca
actccaatccaaagaaagactgtcccagtgattttggatggcaaggatgtagtggctatg
gctaggactggcagtggtaaaacggctgccttcctcatccctatgtttgagaagctgaag
gctccacaagcccaaacaggagccagggccctcatcctgacccccaccagagagttggcc
ctgcagaccatgaagttcacgaaagagttgggaaaattcacaggcctcaagacagccttg
attcttggtggagacaggatggaggatcagttcgctgctcttcatgaaaaccctgacata
atcatcggcacccctggtcgtctcatgcacgttgtcagggaaatgaacctgaagttgaac
ggtgtggaatatgtggtgtttgatgaggctgacaggttgtttgaaatgggttttgctgag
cagcttgaggagatcattaggaggcttccagacaccaggcagactctgctgttttccgcc
actctgcccaaactgctggtggattttgccagagctgggctgacagaaccagtactgatt
cgtttagatgtggattctaaactcagtgaccagattaagctgtcattctttcatgtgcga
gtggatgacaaggcggccctgctgctatatctcctgagaaacgtagtgaaacctcaggag
cagacggtagtttttgttgccaccaaacatcatgtagagtacgtcaaggagctgctgtct
acagaaggtttggagtgcgcttacatctacagtgctcttgatcagactgccaggaagatc
aatattggaaaatttgtgcataggaaagccatggtgctagttgtgactgatgtcgctgct
cgtggtatagacatccccctgctggacaatgtcatcaactacaactttccctcaaagccc
aagctcttcttgcacagagttggtcgtgtgggacgtgcggggcgcagtggcacaacctac
agtatgatttgccctgatgagatgccttttgtttatgaccttcacctcttccttggaagg
ccccttcagatcgccacacccgaacacgcacaagatgccgatggtgtgtttggtcgggtc
cctcaaagtatccttgatgacgaaagctcaaatcttgtcacgtctcacgagaactccttg
gacctgcaaaacatgcatcgtgtctcggagaacgcctacaagcagtacctcaagtctcga
ccaaacccctcgccagagtccgtcagacgagtcaaaaacacagatctgtccatcatggct
gtccatccattactggggtcgggtttggagaaaatggaactagaccgtcttcaaatagtt
gatgccatcaaaggctacaaatccaaatcgactatatttgaaatcaactcccacagtaag
acacaggccagcgaggtgatgagggccaaacgctccaaggactcgcggttggtagacaaa
tttagcaagcatagagatgacctggctgcagagagccgtctgcatctatccgtccaccac
tccaacactgacgaggcttccacacacatcgcagaccaggaggaggacgatgatataatg
ggggtgttctcagaggtggttggtggaaagaggagagtcttgcaggaagatgggggacaa
ccaaagaacaagaaaagcaaacaaacaggcaaagatgaggactattacattccctacaga
cctaaagacttcaactctgagagagggttaagtcttggtggagagggcactgcgtttgac
caacaggcctcttcagctgtcctggacctcatgggagatgagggagacagattaaaccag
cacaaacaaattatgaaatgggaccgcaagaggaagcgcttcgtcagagagacaggaagg
gaagaccagaagaaaaagttaagattagacggcggccaagtcatccagaacaaaaagaac
aagaagaacttttacgaggagtggaagaaaaagtacagggtcgatgacggaggagctggc
tcagatggagaaacaggaggaggagggagaaggccaggaggaggtcgtggccgtggtcga
cgaggtcctcagttccaaagcccgggacgaccacagcagacaccaggtggccgtagagtg
cgctcagagctgaagacaaacgagcagatcctgaaacagcgcaagaaagatcagaagcac
cagttcctgcagggcggaggtctgaagaacctccggaacaagaacaagaagtttctcgga
caagtcaagaagtccggttttggtcggggcggccaaaagaaaggcaagatgaagaagaga
atgtga
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