Scomber japonicus (chub mackerel): 128380792
Help
Entry
128380792 CDS
T09718
Name
(RefSeq) ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128380792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sjo03041
]
128380792
03009 Ribosome biogenesis [BR:
sjo03009
]
128380792
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128380792
Spliceosome [BR:
sjo03041
]
Complex A
U2 snRNP components
U2 related factors
128380792
Complex B
128380792
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
128380792
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
90S particles
Helicases
128380792
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Cas3-like_C_2
Flavi_DEAD
AAA_29
nSTAND_NTPase5
Atrophin-1
AAA_7
nSTAND3
Motif
Other DBs
NCBI-GeneID:
128380792
NCBI-ProteinID:
XP_053196673
LinkDB
All DBs
Position
2:complement(18710642..18718827)
Genome browser
AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSTKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDRDRDPKSSSVP
SNSTPVVVGLPPLKQMAVQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKESFNDIITRQ
QSFVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRPDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEYNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMGNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgtctggacttgggcgatgactactcttccactaagaagaggtcc
gaagggagagatagggaccgtgacagagaccgtgaggatcgctcccgggacagggacaga
gatcgggatcgggacagggacagagaccgggacagagacccaaagtcatctagcgtgcca
tctaacagcacaccagttgtggtgggcttaccgcccctcaagcagatggcggtgcagcag
cagatcaacccattcaccaacctgccgcacacgccacgcttctatgagatcctgaagaag
aggttacagctaccagtttgggaatacaaggaaagcttcaatgatatcatcacacgtcaa
cagagctttgtcctcgtcggagagactggctctgggaagacaacacagatcccacagtgg
tgtgtggacatggtgaggggcttgcctggtcctaagcgggcagtggcatgtactcagccc
aggagagtggcagccatgagtgtcgctcaaagagtggcagacgaaatggacgtcatgctt
ggacaggaagtcggctattccattcgatttgaggactgtagctctgccaagactatactg
aagtacatgacagacggtatgttgctaagagaggctatgaacgacccgctgctggaacga
tatggtgtgataattctggacgaggcccacgagcgaacactggccacagacatcctgatg
ggagtactgaaggaggtggtgcgacaaagaccagatctgaaggtgattgtcatgagtgcc
acgctagatgccgggaagtttcaggtgtactttgacaactgtcctctgctgactattcct
ggacgtacgcatcctgtggagatcttctacacccctgagcccgagcgagattaccttgaa
gcagcaatccgcacagtcatccagatccatatgtgtgaggaagatgaaggtgactgcctt
ctctttctcactggtcaagaggaaattgatgaggcctgcaaacggatcaagcgtgaggtt
gatgaccttggacctgaagttggagacattaaaatcattccactgtattcaacattgcca
ccacagcagcagcaaaggatctttgagcctcctcctccaaggaagcccaatggtgcaata
ggaagaaaggttgtcgtgtcgacaaacattgctgagacctctctgacaattgatggtgtg
gtgtttgtcattgatcctggattcgccaaacaaaaggtgtacaatcctcgtatcagagtt
gagtcattgctcgttacggccatcagtaaagcttctgcccagcagagggcagggcgagct
ggcagaacacgtccggggaaatgtttccgtctctacacagagaaagcatacaaaacagag
atgcaggataacacgtaccctgagatcctgcggtccaacttgggatctgttgtgctgcag
ttgaaaaaactgggtatcgatgaccttgtgcactttgacttcatggatcctccagctcct
gagacattgatgagggcccttgagctgctgaactacctggcagcgctcaacgatgatggt
gacctgacggagctgggctccatgatggctgaatttcctttggacccccagctggcgaag
atggttattgctagctgcgagtacaactgctctaacgagatcctttccattactgccatg
ctgtcagtcccacagtgttttgtccgccccacggaggctaagaaggcagcagacgagtcc
aagatgaggtttgctcacatcgacggagaccacttgacgctgctcaacgtctaccacgcc
ttcaaacaaaaccacgaatctaaccagtggtgctatgacaactttgtcaactaccgatca
ctgatgtctgccgacaacgtgcggcagcagctgtccaggatcatggaccgcttcaacctg
ccccgcagaagcactgagtttaccagcagagattactacatcaacatccgcagagcgctc
tgcaccggcttcttcatgcaggtggctcatttggagcgcacgggtcattacctcacagtc
aaagacaaccaagtggtccaactgcacccgtctacagtcctggatcacaaacctgaatgg
gtgctgtacaatgaatttgtcctcaccaccaagaactacatacgcacttgcacagacatc
aaaccagagtggttggtgaagattgcaccacagtactatgaaatgggtaacttcccacaa
tgtgaagctaaaagacagctcgagcgaatcattgccaaactagagagcaaggagtattcc
cagtactga
DBGET
integrated database retrieval system
