Scomber japonicus (chub mackerel): 128380899
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Entry
128380899 CDS
T09718
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128380899 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128380899 (smarca5)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128380899 (smarca5)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
128380899 (smarca5)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
128380899 (smarca5)
RSF complex
128380899 (smarca5)
WICH complex
128380899 (smarca5)
B-WICH complex
128380899 (smarca5)
NORC complex
128380899 (smarca5)
BRF complex
128380899 (smarca5)
NuRF complex (fruit fly)
128380899 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
DBINO
ERCC3_RAD25_C
Myb_DNA-binding
AAA_14
Motif
Other DBs
NCBI-GeneID:
128380899
NCBI-ProteinID:
XP_053196757
LinkDB
All DBs
Position
2:complement(16296479..16304786)
Genome browser
AA seq
1036 aa
AA seq
DB search
MSESENCVEPREEEPTEPEEAGGAEEKSDCSDAGKESSSDAGPDGQDASSSSSTKTKDSA
PGYEEKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLS
AGDNRHRRTEQEEDEELLNESTKTTNVCTRFDDSPSYVKTGKMRDYQVRGLNWLISLYEN
GINGILADEMGLGKTLQTIALLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRA
VCLIGGRDERTALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEK
SKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWFDTNNCLGD
QKLVERLHTVLRPFLLRRIKADVEKTLLPKKEIKMYVGLSKMQREWYTKILMKDIDILNS
AGKMDKMRLLNVLMQLRKCCNHSYLFDGAEPGPPYTTDLHLVVNSGKMAVLDKLLPKMKQ
QGSRILIFSQMTRMLDILEDYCMWRNYGYCRLDGQTPHEERQISINAYNEPNSSKFIFML
STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVFRFITENTVEERI
VERAEMKLRLDSIVIQQGRLVDPSANKLGKDEMLSIIRHGATHVFASKESEITDDDIDVI
LEKGERKTMEMKEKLSSLGESSLRNFTMDTENSSVYTFEGEDYREKKKVITNWIEPPKRE
RKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIG
YKVPRNPDMPNSAQVQKEEQAKIDEAEALTEEELEEKENLLQQGFTIWNKRDFNQFIKAN
EKWGRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISI
KKALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCI
RNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKGGSAQKRK
SEGTPDGRGRRKKLKL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagagcgaaaactgcgtggagccgcgggaagaagagccaacggaacctgaagaa
gccggtggagcggaggagaagtccgactgctcagatgctggaaaggagtcgtcttcagat
gcagggccagatggccaagatgcatcctcctcctcctcaaccaaaactaaagattctgct
ccaggttatgaggagaaagtgcaaacagaccggaccaacagatttgagtacctgttgaag
caaacagagctatttgctcatttcatccaaccagctgcacagaagacccccacctccccc
ctaaagatgaaaccaggacgtcctcgcattaagaaagatgagaagcagaacttgctgtct
gccggagacaatcgccatcgccgcacagagcaagaggaggatgaagagcttctgaacgag
agcaccaagactactaacgtctgcactcgcttcgatgattctccttcttatgtcaaaaca
ggaaaaatgagggactatcaggtccgtggtctgaactggctcatctctttgtatgaaaat
ggaatcaacggtatcctcgctgacgaaatgggtttgggaaagacactgcagactattgcc
ttgctgggttatatgaagcactacagaaacatccctggtccccacatggtgctggtgccg
aagtccaccctctacaactggatgaatgagttcaagcgatgggtgccgtcactgcgtgca
gtctgcctgatcggaggcagagacgagaggactgccctgatcagagatgtcctcctgccg
ggagagtgggatgtgtgcgtcacatcctacgagatgctgatcattgaaaaggccgtgttc
aagaagttcaactggagatacctggtcattgatgaagcccacaggatcaaaaatgagaaa
tcaaagctgtcagaaattgtgcgagaattcaagaccaccaatcgtctgctgctgactggc
acaccccttcaaaacaacctccacgagctatgggccctgctgaacttcctgctgcctgac
gtcttcaactcagcagaggactttgattcctggttcgacaccaacaactgcttgggtgat
cagaagttggtggagcgtctccacactgttctgcgccctttcctgcttcgtcgtattaaa
gctgatgtagagaagactctgctcccgaaaaaagagatcaagatgtatgtgggtctcagt
aaaatgcaacgagaatggtacacaaagattctgatgaaggacattgatattctgaactcg
gcgggtaagatggacaagatgcggctgctcaacgttctcatgcagctgcggaaatgctgt
aaccattcatacctatttgatggagctgaaccaggtcccccttacaccacggatctccac
ctggtggtgaacagtggcaagatggcggtgctggacaagctgctccccaagatgaagcaa
cagggctcccgtattctcatcttcagtcagatgaccaggatgctggacatcttggaggac
tactgcatgtggagaaactacggctattgtcgcctggatggtcagaccccacacgaggag
cgacagatctctatcaatgcatacaatgagccaaacagcagcaagttcatcttcatgttg
agcaccagggctggtgggctgggtatcaatctagctacagctgatgtagtcatcctctac
gactcagactggaaccctcaagttgaccttcaggccatggaccgagctcacaggattggt
cagcagaagcaggtgcgtgtattccgcttcatcactgaaaacacagtggaagagaggatt
gtggagagagccgagatgaaattgcgcctggactctattgtcatccaacaaggaagactt
gtggatccaagtgcaaacaagctgggcaaagatgagatgctttccatcatccgtcacggt
gccacacatgtgtttgcctccaaagagagtgaaatcacagatgatgacattgatgttatc
ctagagaaaggtgaaaggaagactatggagatgaaggagaagctgtcttccctgggtgag
agctctttgagaaacttcaccatggacacagagaacagcagcgtgtacacatttgaagga
gaagactacagagaaaagaaaaaggttattaccaactggattgagccacctaagagagaa
aggaaagctaattatgctgtggatgcatacttcagagaggctctgcgcgtcagtgagccc
aaagcacccaaggctcctcgtcctcccaagcagccaaatgtccaggacttccagttcttc
cctccacgtctttttgagcttctagaaaaggaaatcctgttctacagaaagaccataggc
tataaggttccccgtaacccagacatgcccaactcagcccaggtccagaaagaggagcag
gctaagattgatgaggctgaggccctgacagaggaggagctggaggagaaggagaacctt
ctgcaacagggatttacaatttggaacaaacgtgacttcaaccagttcatcaaagccaac
gagaagtggggaagagacgacattgagaacattgccagagaggttgagggaaaaactcca
gaggaagtcatggaatattctgctgtattctgggagcgctgcaatgagctgcaggacatt
gagaagatcatggcccagatagagagaggagaggccaggattcagagaaggattagtatt
aagaaagcactggactcaaagattggtcgctataaggccccattccatcagctccgaatc
tcctatggcactaacaaaggcaagaactacacagaggaggaagaccgattcctcatctgc
atgctccacaagctgggttttgacaaggagagcgtgtacgacgagctccgtcagtgcatc
cgtaactcacctcagtttcgctttgactggttcctcaaatccaggactgccatggagctc
caaaggcgatgtaacacactgattacactgatagagagagagaacatggagctggaggag
agggagaaggccgagaaaaagaagaggggtccaaagggtggctcagcccagaaacggaag
tctgagggaactccagacggtcgtggacgcaggaaaaaactgaagttgtga
DBGET
integrated database retrieval system
