Scomber japonicus (chub mackerel): 128380949
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Entry
128380949 CDS
T09718
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
128380949
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sjo04040
]
128380949
Ion channels [BR:
sjo04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
128380949
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GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
128380949
NCBI-ProteinID:
XP_053196821
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Position
20:12425898..12515469
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AA seq
1133 aa
AA seq
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MSKNRERFNPDPSIHISKMDMIIPFSPDVPCDSNGQRMWWAFLASSMVTFFGGLFIILLW
RTLKYLWTVCCHCNAKKKEVHRITTGDGIKRVDKDDPAASEVGWMTSVKDWAGVMISAQT
LTGRVLVVLVFALSIGALVIYFIDSSDPIESCQNFYQDFTLQIDMAFNVFFLLYFGLRFI
AANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEILQFLNILKT
SNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQNSQALSYWECVYLLMVTMSTVG
YGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVNGRKHIVVCG
HITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPH
DLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHL
LNIPSWAWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYL
EGVANEMYTEYLSSAFVGMSFPVICELCYVKLKLLLIAIEYKSDQRESSTLINPGNHVKM
QEGTLGFFIASDAKEVKRALFYCKACHDDITDPKRIKKCGCKKSKNSYNGYIKSIEDDQQ
SALSPKKKQRNGGMRNSPNSSPKIMRHDPLLIPGNDQIESMDENVKKYDSTGMFHWCPSK
DIEKVILTRSEAAMTVLSGHVVVCIFGDVKSALIGLRNFVMPLRASNFHYHELKHIVFVG
SLEYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDASLQDK
ECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPENSPVHGLVRQTSVTTGANIPI
ITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIR
TLVTGGATPELEGLLAEENALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGD
LFCKALKTYNMLCFGIYRLRDAHLNAQSQCTKRYVITNPPYAFELVPSDLIFCLMQFDHN
AGQSRTSLSHSSHSSHSSSKKSSSVHSIPTTNRTNRTKSRDTRDKQKKDMVYR
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaacagggagagattcaacccggatccgtccatccacatatccaagatggat
atgatcatcccgttttctccagacgtgccctgtgacagcaatggccagcgaatgtggtgg
gctttcctcgcctcctccatggtcactttctttgggggtctcttcataatcctgctttgg
agaactctcaaatacctgtggactgtctgctgccactgtaatgctaaaaagaaggaggtc
catcggatcaccacaggcgatggcatcaagcgtgttgacaaggatgacccagcggcaagc
gaggtgggctggatgacctcggtcaaagactgggccggagtcatgatatctgctcagacg
ctgacgggcagagtcctggtggtgctcgtatttgctctcagcattggagcccttgtaata
tacttcatagattcttctgatcctatcgagtcctgtcagaacttctaccaagacttcaca
ttgcagattgacatggcattcaacgtgttcttcctgctgtacttcggcctccgttttatt
gctgccaatgacaagctgtggttctggttggaggtgaactcggtggtggacttcttcacg
gtgcctccggtgtttgtgtctgtgtacctgaacaggagttggctaggcttgaggttttta
agggccttaaggttgatacagttctcagaaattttacagtttttgaatatactaaagaca
agcaactccataaagctggtgaacctgtgttcaatcttcataagcacatggctaactgca
gcaggcttcatacatttggtggaaaactcaggggatccttgggaaaacttccaaaattct
caagcactttcctactgggaatgtgtctacttactcatggttactatgtccactgttggc
tatggagacgtttatgcaaaaaccaccctgggccgcctgtttatggtcttcttcatcctt
ggtggtttggccatgtttgcgagctacgtccctgaaatcatagagttaataggaaaccgc
aagaaatatggtggttcctatagtgctgttaatgggagaaagcacatcgtggtctgtggt
catataacacttgagagtgtgtccaactttctaaaagacttcctacacaaggacagggat
gatgtcaatgtagaaattgtttttctccataatatttcccctaatcttgagctggaagcc
ttattcaagcggcacttcacccaggtggagttttaccaagggtctgtcctaaacccacat
gacctggccagagtcaagattgaatctgcagatgcatgtttgatcctagccaacaaatac
tgtgctgaccctgatgctgaggatgcatccaacatcatgagagtaatatccatcaagaac
taccatccaaagatcagaataatcactcaaatgttgcagtaccacaataaggctcacctt
ttgaacataccaagctgggcctggaaggagggcgacgacgccatttgtcttgcagagctg
aaacttggctttattgcccagagctgcctggctcagggcctctccaccatgctggccaac
cttttctccatgaggtccttcatcaagattgaggaggacacatggcagaagtattaccta
gaaggagtagccaatgagatgtacactgagtatctgtcgagtgcctttgtaggcatgtct
ttccctgtaatttgtgaactctgctacgtgaagctaaagctactcctaatagctatagag
tacaagtctgatcaaagggaaagcagcaccctgataaaccctggaaaccacgtgaaaatg
caggaggggaccttgggcttcttcattgccagtgatgccaaagaagtaaagagggcattg
ttttactgtaaggcttgccatgatgacattactgatcccaaaaggataaagaaatgtgga
tgcaagaaatctaaaaatagctataatggatatatcaaatcaattgaagatgaccaacag
tcggcgctatcgcctaaaaaaaagcaacgcaatggaggcatgagaaactctccaaactcc
tcaccgaagataatgagacatgacccgctcctcatcccagggaacgaccagattgagtcc
atggatgagaacgtaaagaaatacgactccacagggatgtttcattggtgcccgtccaaa
gacatcgagaaggtcatcttgacccggagcgaggcagcgatgactgttctgagcggccat
gtggttgtgtgcatatttggggacgtgaagtcagcgttgatcggtctccgaaactttgtc
atgcccctgagagcgagcaactttcactaccatgaactgaagcacattgtgtttgtcggc
tcccttgagtatctgaaacgcgagtgggagactcttcataattttccaaaagtctccatt
ctgcctggcacaccactgagtcgggcagatctgagggctgtcaacatcaacctctgtgac
atgtgtgtcatcctgtcagccaatcagaacaatattgacgatgcatcactgcaggacaaa
gaatgcatcttggcgtcactcaacatcaaatccatgcagtttgacgacagcatcggggtc
ttgcaggctaattcccaaggcttcacaccacctggaatggatagatcctctcctgaaaac
agcccagtccatggattagtaagacagacgtctgtgacaactggggcaaatattcccatc
ataacagaactagtgaatgactcaaatgttcagttcctggaccaagatgatgatgacgac
ccagacacagagttatacctcactcagccttttgcctgtgggacagcctttgcagtcagt
gtgctggattccttaatgagtgctacatacttcaatgataatatcctcaccttgatccgg
acgctggtaacaggcggggcgacacccgagctggagggactgctagcggaggagaatgca
ttacggggaggctacagcacgccacagaccctggcaaacagggacaggtgtcgcgtggca
cagctggctttatacgacgggccctttgccgacctgggggatggtggttgttatggtgac
ctgttttgtaaagctctgaaaacatacaacatgctgtgctttggcatctatcggttacga
gatgcacatctaaatgcacaaagccaatgtaccaaacggtatgtcataaccaatccacca
tatgcgtttgagctggtgccctcagacctgatattctgcctgatgcagtttgaccacaac
gctggccagtctcgaaccagcctctcccactcttcccattcgtcccattcctccagcaaa
aagagctcctctgtccactctatcccaaccaccaaccgtaccaaccgcaccaaaagcagg
gacacacgagacaaacaaaaaaaagacatggtttacagatga
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