Scomber japonicus (chub mackerel): 128380984
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Entry
128380984 CDS
T09718
Symbol
polr3a
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03020
RNA polymerase
sjo04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128380984 (polr3a)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
128380984 (polr3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128380984 (polr3a)
Enzymes [BR:
sjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128380984 (polr3a)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
128380984 (polr3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
128380984
NCBI-ProteinID:
XP_053196870
LinkDB
All DBs
Position
20:complement(12177213..12200079)
Genome browser
AA seq
1390 aa
AA seq
DB search
MVKEQFRETDVARKISHICFGMKSAEQMRQQAHIQVVSKNLYSQDMNHTPLPYGVLDHRM
GTSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKAIIGILQMICKTCSSIMLTKE
EKLQFIDMLKRPNLAYLQKRGLKKKISDKCRKRTICLHCSAFNGPVKKCGLLKIIHEKYK
TTKKVVDPFVSEFLQSFDTAVEHNKVVEPLLTRAQENLNPLVVLNLFKRIPQEDITLLLM
NPEAGKPADLILTRLLVPPVCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANF
IQNRHTQMKRFLKYGNREKIAQELRFGDVVERHLIDGDIVLFNRQPSLHKLSIMAHIARV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
AIQDFLTAGYLLTLKDTFFDRSKACQIVASILVGKDEKIRICLPHPAIIKPMALWTGKQI
FSLILKPSKECPVKANLRTKGKQYCGKGEDLCHNDSFVVIHNSELMCGSMDKSTLGSGSK
NNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKQDLLDDG
YEKCDEYIEALQTGKLQQQPGCTAEETLEALILRELSVIRDRAGSACLRELDKSNSPLIM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYS
GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQF
IYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYACPDEPALSQNELVLTADAIMKRTDFLC
CRDSYLEEIKKFIKSISERIKKTRDKYGINDNGTSEPKVLYQLDRITPKQLEKFLETCRD
KYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNI
STPIITAHLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLL
RLEVNAETVRYSICMSKLRVKPGDIAVHGEAVVCVSPRENNKSSMYYVLQSLKEELPKVV
VQGIPEVSRAVIHIDEQSGKNKYKLLVEGDNLRAVMATHGVNGSRTTSNNTYEVERTLGI
EAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLAS
FEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKAEKDPSPVKRPLLFE
NADFHIPLIT
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggagcagttcagagagacagatgtggccaggaaaataagccacatctgcttt
gggatgaaatctgctgagcagatgcgtcagcaggcccacatccaggtggtcagtaagaac
ctttacagccaggacatgaatcacactccactgccctatggagtgttggaccaccgtatg
ggtaccagtgagaaagacagaccgtgtttgacatgtgggaagaatctggctgattgttta
ggacattacggctacctggatctggagctgccatgttttcatgtcggctatttcaaagcc
atcataggaatcttacagatgatttgcaagacatgttctagtataatgctgacgaaagag
gagaaactgcagttcatagatatgttgaaacggcccaacctggcctatctccagaagcgt
gggttgaagaagaagatctctgataaatgccggaaaaggacaatctgtctgcattgttcg
gcttttaacggaccagtgaaaaagtgtggcctgcttaaaattatccatgagaagtataaa
acaaccaagaaggttgtggatccttttgtgtcagaattcctgcagtcctttgatactgcc
gtggaacacaacaaagtggtggagcctctgctaacacgggcgcaggaaaacctgaaccct
ttggtggtgctgaacctcttcaagaggattccccaagaagacatcaccctgctgctgatg
aaccctgaggcagggaaacctgcggacctcatcctcacccgcctcctggtgcctcctgtc
tgcattcggccctctgtggtcagcgacctgaagtcaggcaccaacgaggatgacctcacc
atgaagcttacagaaataatcttcctcaacgatgtaatcaaaaagcatcgcatgactggg
gctaagacccagatgatcatggaggactgggacttcctccagcttcagtgtgccctttac
atcaacagcgagctctctggcatccccctcaacatggcacctaagaaatggacaagaggc
tttgtgcagagactcaagggcaagcaaggtcgattcagaggaaacctctcagggaaaaga
gtggacttctcaggcagaactgtcatttctcctgacccaaatttgaggatcgatgaggtg
gccgtccctgtgcatgttgccaaaatcctgacatacccagagagggtcaacaaagccaat
ctcgagctaatgaggaaacttgtgcgcaatggccctgaagttcaccctggtgccaacttt
atccagaatcgtcacacacagatgaaaaggtttttaaaatacggaaaccgtgagaagatt
gctcaggagctgaggtttggtgatgtggtagagaggcacctgatagacggagatattgtc
ctattcaatcgacaaccttctctgcacaaactcagcatcatggcccacattgccagagtc
aaaccacacaggacgtttcgcttcaacgagtgtgtgtgcaccccctacaacgctgatttt
gacggtgatgaaatgaatctccatttacctcagactgaagaagccaaagctgaagcactg
gtcctgatggggacaaaagctaatcttgtaactccgagaaatggcgagcctctgattgct
gctattcaggactttctgacagcgggctacctcttgaccctgaaggacaccttctttgac
agatcaaaggcctgtcaaatagtggcatcaatccttgtaggcaaagatgaaaaaatcaga
atctgtctcccccacccagctataataaagcccatggctctctggacaggcaaacagata
ttcagcctcattctgaagccaagtaaggaatgtccagtcaaggcaaatctgcggaccaag
ggcaaacagtactgtggaaagggagaggatctctgtcacaatgactcattcgtggtgatc
cacaatagtgagctgatgtgtggtagcatggacaagagcaccttgggatctgggtccaag
aacaacatcttctacatcttgctgagagactggggacagctggaggctgccaatgccatg
tcccgccttgcacgactcgctccagtgtatctgtccaacaggggcttttccattggcatt
ggggatgtgacacctggtcagggtctactgaaggccaaacaggacctgctggatgacggt
tatgagaagtgtgacgaatacattgaagctctgcaaacgggcaaactgcagcagcagccc
ggctgcacagcagaggagaccttggaggcgctaatcttgagagaactgtcagtcatcaga
gaccgagctggcagtgcctgcctcagggagctggacaagagcaacagcccattgattatg
gctctttgtggctccaaaggatccttcattaacatctctcagatgatcgcctgtgtgggc
cagcaggccataagtgggtctcgagtacctgacggttttgaaaatcgctccctgcctcac
tttgaaaagcactcaaaactgcctgctgctaaaggctttgtggccgacagcttctattct
ggcctgacacccacagagttcttctttcacaccatggctggtcgtgagggtctggtggac
actgctgtgaaaactgcagagactggatacatgcagagacgtctggtaaagtccttggag
gatttgtgctcacagtacgacctgacagtacggagctccacaggtgacatcattcagttt
atttatggtggagatggtctggaccctgctgcgatggagggaaaggatgagccgctggag
tttaagagagtcttagacaatatccgggcggtctacgcgtgtccagacgagcctgcactc
agtcaaaacgagctggtcctcaccgcagatgccatcatgaagagaactgacttcttatgc
tgcagagacagctacttggaggagataaagaagtttattaagagcatctcagaaaggatc
aagaagacgagagacaagtacggtatcaacgacaacgggaccagcgagccaaaagttctc
tatcagctggaccgcataacccccaaacagctggagaagtttcttgaaacctgcagagac
aagtacatgagagctcagatggagccgggctctgcagtcggggccctttgtgcccaaagt
attggagagcctggtactcagatgaccctgaaaactttccactttgctggtgttgcgtcc
atgaatatcactcttggtgtgcctcgcataaaagagatcatcaatgcctccaagaatatc
agcacccctataatcactgctcatttggatgtggaggatgacgctgactttgccagactg
gtgaaggggaggattgagaaaactcttctgggagagatttccgaatacatagaagaggtg
ttcctaccagatgattgttttatcctggtgaaactgtcactggagagaatacggctgctg
cgactggaggtaaatgcagaaacggtgcgttactccatctgcatgtctaaactgcgagtg
aaaccaggagacattgctgttcatggcgaggctgtggtgtgtgtgtctccacgagagaac
aacaaaagctccatgtactacgttctgcagtctttaaaagaagaacttcctaaggtggtg
gttcaaggaataccagaggtttccagagctgttattcacattgatgaacagagtggcaag
aacaagtacaaactcctggtggagggcgacaacctgagagctgtcatggcaacacacgga
gtgaatggaagcagaaccacttccaacaatacttacgaggttgagaggaccctgggtatt
gaggctgctagatcgaccatcatcaatgagattcagtacactatggtgaaccatggaatg
agcattgatcggcggcatgtcatgcttctcgcagatctcatgtcctataagggggagata
cttggaatcaccaggtttggtttagccaaaatgaaggagagcgtcctcatgctggcctcc
ttcgagaaaactgctgatcacctctttgatgctgcgtactttgggcagaaggactcagtc
tgtggtgtgtctgagtgcatcattatggggattccaatgaatatcggaacaggactgttt
aaactgctacacaaggctgaaaaggatccctctccagtcaaaaggcctctcctctttgaa
aatgcagactttcatatacctctgatcacatag
DBGET
integrated database retrieval system
