Scomber japonicus (chub mackerel): 128380988
Help
Entry
128380988 CDS
T09718
Symbol
tnrc6ba
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128380988 (tnrc6ba)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128380988 (tnrc6ba)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128380988 (tnrc6ba)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128380988 (tnrc6ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
128380988
NCBI-ProteinID:
XP_053196877
LinkDB
All DBs
Position
20:complement(19845140..19862326)
Genome browser
AA seq
2151 aa
AA seq
DB search
MEDKKRKKDDKRKREASQKVTEQKNKVLDLTKPASAQSPATQSSSASPSPGPTPSASPSP
ATSGPGSAATQSQGGNNAKRLAVANGQPTSTTSSSSVAGGPSATGNGSTSSGGGAQAPQQ
QPRYMPREVPPRFRCQQDHKVLLKRGQPPLSSMLLGGGGGGDGPNANMAAVSDSSAAASS
LALTSSSVAASTTTSNYANSMWGASSGSQTSSQGREKVIVDGNDLEEWPSIAGNDGGGSS
FAVTGGGSSNNGMPVNSISASGNQSSPTSLFSLPNECMQSSNGVAWGTAASQGHLGGGNT
VAAAGPLLQQPSSLSKASAVPGSHDASGPVDGSSGIPGANFNPNANPSAWPALVQQDGPA
AAGEGGQSSFHHQGPGGSLSANNSASLGLGAGTVGVLGGHPPLSVNQSSTHQHQLHQMQS
RDREMGGGKWDSESAGPKIAGGEGIGGGMDRSVGGGGMSVGDHSLASSWRGQPSYPAANS
KTGASRTDGWEGGGSGTGGFGAAEGDNGTSSWGYPSSTSGVNAWGSAGTGGNGSQTSGVS
QGGWGSSGVGGERAVSGGDWGGSSTGIGGANPGGEGMGGTCSSNSSSSGVSTAGNPPVTS
CSSSTATALTRAWDNQKGEGETGEWGGGVGGQGARGGSSSSGGNSRSGSEPNNSNSRPRR
PAPSAEGALQSLLSRSDLDPRVLSNTGWGQTQIRQNTAWDLEDHGGQSKGGSTSATSKHP
STLGGSSQYSGGPRTLITDSMGPGVNPSMVPSAGSSGEGWESSSNSSSSGASLSGRAPPP
SGSNMRNLGVSQSGPVTTTGPGMGSGVMPGHSQQGKTTGWGGGGMGSGDGKEAKGWGNEE
WRNSRGGNGGGWGDVGQQGDQVSGGWGGCQEEKGKGGWKEMGGDGGGSSGWGSGQKVGAG
RDWGEQQSKSNNGGGGWDDERKNGGGNSGGDSGAGGWGNWDEGAPRRTWGAGGTGGGGSG
GGGMGVVGGMGSKPHQSWSGGNKMHQMPNSQSGSITGPQAQLQQQQSQPRNQHPQLQQAL
DQGAMQGGGGRKPISQAQNQNQSSGWTSGPIPGGPGGGSGSEPSGWEEPSPQSISRKNEI
DDGTSAWGDPTRYNYKPVNLWDKNSTPAGQQPHGQAPAPQQQQQQQQQQQQQQPPQQQQQ
QQQGPPIQQQPSRQAAGLGGNRDFNTGHGPGKAAAMGSSGWGGASPTSPTVDNGTAAWGK
PNDTPTDWGDPDDAGGKTTGWGNPTPNPIKPGSKSMQDGWGDKESSVAASRHSSWEEEEE
GGGGMWNSTGSQGSGSSWGQGSNGGWGQTHPGKKPSSKGPLKAGGGDSWMSPINRQFSNM
GLLNDDPSGPNIDLAPGSLQEKKMDAEKRGMGMTDYNGDIRKGGRVGGGGGVGGMSYRSP
VSKEAVPGDAGSYYDKTLPLTNQDGCLGEEGPRSLYSPPTVYKPHSLFNHTIPFRQGGHG
IFGSSGGMAQSRHQPSVPPINQSPGIRAQVPHQFLSPQVPGSVLKQMPPPSGSVGGVGGV
GGVAGVGGGVFPPQLSPQHIAMLSSIYPPHIQFQLACQLLLQQQQQPQQQQQQLLQNQRK
FTPNVRQQADPQQLARIMAVLQQQRQQQQQVGGLGGSSRLSPSHHSGGGGGGAKLPGADP
LPHPGLARSVADLHQKTIGPYSGFGSGVNLPGLDLGGSVVGGPGGMKDLGGQQSRFKWMM
EGHSSPDTSPSEDAFHKNGPVTPMKMPGGSPYSQYDMMVGDGLGNNWHRTPGNKMGSKPT
TTPSWPPEFQPGVPWKGIDRVDPESDPYMTPGSMMGNAVSPNLNDTEHQLLQDNTDSTPP
LNTLLPSPGAWPYSASDSPLNNAHSAKYTDYKTSWPPEPIGHKSWKASRGSSQSQLSRPP
PGLASQKQPSPSPWSGGAPRLAGRGWGGGSSTTASTWSDGSSRESCWLVLSNLTPQIDGS
TLRTICMQHGPLLTFHLGLTQGTALIRYGSKQEAAKAQSALHMCVLGNTTILAEFVSEED
VARYIAHSQAGGAGSGGNTSGSAGSGPNATSAVGTNGNGGSCDRGGAGGSSGGGAVDGGS
TAGGAGNGGAGPVSSGWQSLDSTGSSSDQSASQGPGLGIFAQWSSNGGGVGGAGGMEAGR
QGLWGGMGGMSGAGYPSSSLWGSPALEDRHQMGSPASLLPGDLLGGGADSI
NT seq
6456 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaggaaaaaagacgataaaaggaaaagggaagcctctcagaaggtt
acagaacaaaagaacaaagtgctagacttgaccaagccggcatctgcccagtctcctgcc
actcagagcagctctgcctcccccagccctggacccaccccctctgcttccccatcccca
gccacctcgggccctggcagtgctgccacccagtcacagggtggcaacaatgccaagcgc
ctggcggtggccaacggacagcccacctccaccaccagttcttcctccgtcgctggcggc
cccagtgctactggaaacgggagtacaagtagcggaggcggagcccaggcgcctcagcag
caaccccgctacatgccgagagaagtgccgccgcgattccgctgccagcaggaccataaa
gtgctactgaagaggggtcaaccgccactgtcctccatgctgctgggagggggaggagga
ggggacggccccaatgcaaacatggctgctgtctcagattccagtgcagctgcctcctca
ttggccctcacctcatcatcagttgctgcttctactactacttctaattatgcaaattcc
atgtggggggcgagctcaggcagccaaacctcctctcagggcagggagaaggtgattgtc
gatggcaacgacctggaggagtggcctagcatcgctggcaatgatgggggaggaagttct
ttcgccgtgactggagggggcagcagcaacaacggaatgcctgtgaacagcatcagtgcc
tctggcaaccaatcttcacccacttccttgttctctttgcccaatgaatgtatgcagtcg
tccaatggtgtggcatgggggacggctgcctcccagggtcatcttggaggagggaataca
gtagctgcagctgggcctctgctacaacagccctcctcactttccaaagcctccgctgtg
ccagggagccatgatgccagtggccccgttgacggcagcagtgggattccaggtgccaac
ttcaatccaaatgccaacccttcggcctggcctgccctggtgcagcaggatgggcctgct
gctgcaggggaaggaggtcagtcttccttccatcaccagggccctggagggtctttgtct
gccaacaactctgcttccctggggctgggagccgggacagttggggtgttggggggtcac
ccacctttatctgtgaatcaatcaagcacccatcagcaccaacttcaccaaatgcaatcc
agagacagagagatgggaggggggaagtgggacagcgaatcagcgggaccaaaaatcgca
gggggggaagggattgggggaggaatggaccgtagtgtgggaggaggcgggatgagcgtg
ggagaccacagccttgcctcctcatggagaggccagccttcttaccctgcagctaactcc
aaaacgggtgcctctaggactgacggatgggagggaggaggaagtggcacagggggattc
ggagctgctgaaggggataatgggacctcgagttgggggtatccaagttccactagtggg
gttaatgcttggggtagcgctggaactgggggaaacggtagtcaaacctccggggtatct
cagggagggtgggggtcatcaggagttggaggggagagagcggtgtcgggcggtgactgg
ggcgggagctccaccggtattggcggagccaatccaggaggagagggcatggggggcacc
tgcagcagtaacagcagcagtagcggggtcagcacagccggcaacccccccgtcacctcc
tgctcctcctcaacagccaccgctttgactagagcttgggacaatcagaagggagagggt
gaaacaggggaatggggcggcggagtaggaggacagggagcacggggaggatcctcatcc
agcggtggaaattccagaagtggaagtgagccgaacaacagtaacagtcgtcctcgccgc
ccggcacccagtgctgaaggtgccttacagagcctgctcagccggtctgatctggaccct
cgggttctgtccaacacaggctggggccaaacacagattcgacaaaacacggcctgggac
ttggaagatcatggaggacagagtaaaggtggatcgacatcagctacatcgaaacaccca
tctactctcggtggttcttctcagtattccggtggacccaggaccctaattactgattct
atgggtcctggggtcaatccttccatggttccatctgctgggtcctctggagagggctgg
gagagcagcagcaacagtagcagtagtggggcttctctatctgggagggccccaccacct
tcaggctccaacatgaggaatctcggcgtctcacaatctgggccagtgaccacaacagga
cctggtatgggttcaggggtaatgccaggacatagccagcaggggaagactacaggctgg
ggtggaggagggatggggtctggagatggcaaggaggccaaaggttgggggaacgaggaa
tggaggaacagtagaggaggaaatggaggagggtggggcgacgttggccaacaaggtgac
caagtgagtggaggctggggagggtgtcaggaggagaaagggaaagggggctggaaggag
atgggaggagatggaggaggcagcagcgggtggggatcaggacagaaggttggggcaggt
agggactggggagagcaacagtccaaatcaaataacggaggcgggggttgggacgatgag
aggaagaacggaggaggaaactcaggtggggattcaggtgcgggtggctggggaaactgg
gacgagggcgctccccggagaacctggggagcagggggcacagggggaggagggagcgga
ggaggggggatgggtgtcgtcgggggcatggggtccaaaccccatcaaagttggagcgga
ggaaacaaaatgcaccagatgccaaacagccagtcgggctccatcacaggcccgcaggca
caactgcaacagcaacaatcacagccccgtaatcagcatccacagctgcagcaagcattg
gaccaaggggctatgcaagggggcggggggagaaaacccatctcccaagcccagaaccag
aaccaaagctcaggctggacctcggggcccatccctggtggccctggaggaggaagtgga
tctgaaccaagcggttgggaggaaccctcaccgcagtctattagcaggaagaatgagata
gatgatggaacatcagcatggggagacccaacccgttacaactacaagccggtcaacctg
tgggataagaacagcacccctgctggccagcagcctcacggccaggctccggctccacag
cagcaacagcaacagcaacagcagcagcagcagcagcagccaccacagcaacagcaacag
caacagcagggacctccaatacagcagcagcctagcaggcaggctgctgggcttggaggt
aacagagacttcaacactggccatggacctgggaaagctgcagcaatgggttcgtcaggt
tggggtggtgcttctccaaccagtccaacagtagacaatggcacagcagcttggggaaaa
cctaacgatacccccactgactggggagaccccgacgacgccggagggaagacgacaggc
tggggaaaccctactcccaaccccatcaaacctggttcaaagtctatgcaagatggctgg
ggggacaaagagagctctgtggcagcctcgcgtcactcgagctgggaggaagaggaggag
ggaggcggcggcatgtggaacagcaccggctcccagggaagcggctcatcttggggacag
ggtagcaacgggggctggggtcagacccaccccggcaagaagcccagcagcaagggtcca
ctgaaggctggcggaggagactcatggatgagccccatcaatagacagttctccaacatg
gggctgctgaatgatgatcccagtggcccaaacattgacctggctccgggttctctccag
gagaagaagatggacgccgagaaaagaggcatgggaatgacggattacaatggcgacata
aggaaaggaggaagagtaggaggaggtggaggagtaggggggatgtcatatcgctcaccc
gtttccaaagaggcagtgcccggcgatgccggttcctactacgacaagaccttgcctttg
accaatcaggatgggtgccttggggaggagggtcctcgctctctgtactcaccacccact
gtctacaagccccattccctcttcaaccacactatcccctttagacaaggcggccatggt
atctttggcagtagcggagggatggctcagtcaagacaccagcccagcgtcccacccata
aaccagtccccagggatacgagcgcaagtgcctcatcagttcctgtcgcctcaggtgcca
ggctccgtgctgaagcagatgccccctcccagcgggagcgtggggggtgttggcggcgtg
ggaggagtggcaggagtcgggggaggtgtgttccctccacagctgtccccccagcatatt
gccatgctcagcagcatctacccacctcacatccagtttcaactggcttgtcagctcctc
ctccagcagcagcagcagccacaacagcagcaacagcagctgctgcaaaaccagaggaag
ttcacgccgaatgtgagacagcaggctgatcctcaacagctggccaggatcatggcagtg
ctccagcagcagaggcagcagcagcaacaggtcggaggtttaggcggcagctccagactc
tccccctcccaccacagtggaggtggcggagggggtgccaaactgcccggggctgatccc
ctgccccacccaggcctggccagatctgtggctgacctgcaccagaaaacaattgggcca
tactctgggtttggttcaggtgtgaatctcccaggtctcgacctaggtggctctgtggta
ggggggcctgggggcatgaaggacctcgggggtcagcagtcccgtttcaaatggatgatg
gagggacactcctccccagacacctccccatctgaggacgcattccacaaaaatggtccc
gtcacccctatgaagatgcccgggggctcgccctactctcagtacgacatgatggttgga
gacgggctgggtaacaactggcatcgcacccctggcaacaagatgggtagcaagcctacc
accacacccagctggccccctgaattccagcctggtgttccctggaagggaatcgaccgc
gttgaccctgaatccgacccctacatgactccggggagcatgatgggaaacgcggtgtcc
cccaacctcaacgatactgagcaccaattgttacaagacaatactgattccacccctccc
ctcaacaccttactgccttcacctggtgcctggccctacagtgcctcagacagtcctctc
aacaacgcacactcagcaaagtacacagactacaagaccagctggcccccggagcccatt
ggacacaagtcctggaaagccagtcgcggcagcagccagtcccagctgtcccgccctcct
ccaggattagccagtcaaaagcagccgtcgccttctccgtggtcaggaggagcccctcgg
ttggctggcaggggctggggcggcggctcgagcaccaccgcctcgacctggagtgacggc
agctctcgtgaaagctgctggttggtgctcagcaatctcacaccacagattgatggctcc
accctgaggaccatctgcatgcagcacggccccctgctgacctttcacctcggcctgacc
cagggcaccgctctgattcgctatggctccaaacaggaagcagccaaggcccagagcgca
cttcacatgtgcgttctgggtaataccaccatcttggcggagtttgtgagcgaggaggat
gtggctcgctacattgcacattcccaggctggaggagcagggagcggaggaaacacctcc
ggctctgcgggctccggacccaacgcaacttccgcagtggggactaacggtaacggaggg
agctgcgacagaggcggagcgggaggcagcagcggagggggagcagtagatggaggttcc
acggccggtggagcaggaaacggaggggccggacccgtcagctccggatggcagagtctg
gacagcacaggcagctcatcggaccagtctgccagccaggggcccgggctgggcatcttc
gcccagtggagcagcaacgggggcggagtgggcggagccggaggcatggaagccggaagg
cagggtctgtggggaggaatgggcgggatgagcggggcagggtaccccagcagtagcctc
tggggttccccggcactcgaggatcgtcaccagatgggcagccccgcctcgctgctgcca
ggggacctgctaggcggaggggccgactccatctga
DBGET
integrated database retrieval system
