Scomber japonicus (chub mackerel): 128381025
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Entry
128381025 CDS
T09718
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04510
Focal adhesion
sjo04512
ECM-receptor interaction
sjo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128381025 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128381025 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128381025 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sjo00535
]
128381025 (col9a1a)
Proteoglycans [BR:
sjo00535
]
Extracellular matrix (ECM) proteoglycans
Others
128381025 (col9a1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128381025
NCBI-ProteinID:
XP_053196939
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Position
2:6248603..6267131
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AA seq
687 aa
AA seq
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MALSRICRESLLLLLLQIVMICSAQRGPVGPRGPPGPPGVSGVPGVDGIDGDRGEDSTVN
GGPGLDGDNGKDGLPGVAGLPGADGPVGPPGDPGAVGAQGPKGDPGARGPPGEIGVGPDG
LDGIPGTDGLPGELGKVGPPGARGRRGQVGPPGPAGPRGPPAVYQGEDLCPNACPASLNG
HPGLPGMKGHKGIKGESGEPGRQGHKGEEGDQGPPGEVGSQGLPGPGGKRGLSGIMGSKG
DRGPRGKPGDLGPQGIQGGPGDSGQRGAIGETGPQGVSGERGPSGIRGVPGPKGEAGLAG
PDGREGIPGLPGSKGLPGKNGAPGDAGTQGLPGMPGSYGQKGVSGSKGSTGDPGAVGLMG
SSGKQGERGEQGEVGPVGARGGPGERGERGHDGPIGAPGGRGGKGDLGLPGLPGPAGYRG
QKGDRGAVGLDGSKGDQGSAGSEGTPGDRGELGDQGELGEKGSTGPPGETGNKGPEGGRG
QQGKEGKSGQPGPRGMQGDMGVPGLPGVQGAAGKSPTDTHIKQVCMRVMQEQLAQLAASL
SRPESGIAGIPGPPGPPGPPGPSGENGFPGHTGSRGLPGLKGPPGLLGRKGIKGDQGDRG
DRGPTARGPKGAPGAPGLPGVAGRAAYGTNGRDGERGPRGVPGIHGVPGPPGPAGLNGYC
ESSQCVLPMVASPVSAKDTSMKGPSEM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctctctccaggatctgtcgggagtctttgctgttgcttttactgcaaattgtgatg
atttgctccgctcagaggggcccggtcggtcccagaggacccccagggccccccggagta
tctggcgttcctggagtagatggcattgatggcgacagaggagaggactcaacagtgaac
ggcggaccaggccttgatggtgacaacggcaaagacggacttcccggagttgcaggtctt
ccaggcgcagatggaccagttggacctcctggagatccaggtgcagtgggtgcacaaggg
ccaaaaggggaccctggagcacgtggacctcctggagagatcggtgtaggacctgatggg
cttgatggtattccaggtacagatgggctaccaggtgaacttggtaaagttggaccccct
ggagcaagaggccggagaggtcaagtgggtcctcctggtcctgctgggcctcgggggcct
cccgctgtgtaccaaggcgaggacctgtgtcccaatgcctgtcccgctagtctgaatgga
catcctggtctccccggcatgaagggccacaaaggaattaagggtgaatctggtgagcct
ggaagacaaggacacaagggagaggagggtgaccaaggaccaccaggggaagtcggatct
caaggactaccaggcccaggtggaaaaagaggcctctcaggaataatgggctccaaaggt
gacaggggaccccgtggaaaacctggtgatttaggtcctcagggcatccagggaggcccg
ggtgattctggtcaaagaggagcaataggtgaaactgggccacagggagtgtcgggggaa
cgaggtccatctggaatcagaggagtgccagggccaaaaggagaggctggcctcgctggt
ccagatggtcgtgaaggaatacctggactgccagggtcaaagggtcttccagggaaaaat
ggggctccaggtgatgctggcactcaaggtctccctggtatgccaggttcttatggccag
aaaggtgtcagtggttcgaagggtagcacaggtgatccaggagctgttggactgatggga
tcttcagggaaacaaggcgagcgtggcgagcagggagaagtgggacctgttggagcccga
ggaggaccaggtgaacgaggagaaagaggacatgatggacctataggagcaccaggaggc
aggggaggcaagggggatctgggacttccaggacttcctggtcccgctggttatcgtggc
cagaagggcgacagaggtgcagttggtctggatggttcaaagggagatcagggatctgcc
ggctctgagggaacaccaggagacagaggagaactgggtgatcaaggtgaactaggagag
aaaggatcgacgggcccaccaggtgagacaggaaataaaggacccgagggtggccgagga
cagcaggggaaagagggcaaatcgggccaaccaggaccccgtggcatgcagggtgacatg
ggggtaccaggtcttccaggggtgcagggagcagcgggaaaatcaccgacagatacacat
atcaaacaagtctgcatgagagtaatgcaagagcagctggctcagctagccgccagcctg
agcaggcctgagtcaggtattgctggaatacctggtcccccgggtcctcctggacctcca
ggcccttcaggagagaacggtttccctggacacaccggatcaagaggactacctggtctg
aagggtccacctgggctactgggccgcaaaggcatcaaaggtgaccagggtgacagaggg
gacagaggacccacagcgagaggacccaaaggagcaccgggggctcctggtctgccaggt
gttgccggcagagcggcttatggcacaaacggccgtgacggagagcggggacctcgtggc
gttcccggtattcacggcgttcctgggcctcctggtcccgccggtctcaatggttactgt
gagtcatcacagtgcgttctgcccatggtggcgtcgccggtttcggcaaaggacaccagc
atgaagggccccagtgagatgtaa
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